Bubalus bubalis (water buffalo): 102408711
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Entry
102408711 CDS
T05912
Symbol
PABPC4L
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03015
mRNA surveillance pathway
bbub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102408711 (PABPC4L)
09123 Folding, sorting and degradation
03018 RNA degradation
102408711 (PABPC4L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102408711 (PABPC4L)
03041 Spliceosome [BR:
bbub03041
]
102408711 (PABPC4L)
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
102408711 (PABPC4L)
mRNA cycle factors
Stress granule specific factors
102408711 (PABPC4L)
Spliceosome [BR:
bbub03041
]
Complex C
Other components
Complex C specific factors
102408711 (PABPC4L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_Nup35
RRM_10
RRM_occluded
RBD_DEAH11
RRM_MARF1
RBD_RDR6
DUF4523
RRM_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
102408711
NCBI-ProteinID:
XP_006049486
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All DBs
Position
17:complement(48396905..48402325)
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AA seq
370 aa
AA seq
DB search
MNIAAKYRQASLYVGDLHADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLQ
LADAQKALDTMNFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSA
FGKILSSKVMSDDHGSRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKSRKDREA
EFQNKAHEFTNVYIKNFGDEMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSH
EAAKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHERFRRCQGAKLYIKNL
DETIDDEKLRREFSSFGSISRVKVMQEEGRSKGFGLICFSSAEEATKAMTEMNGRILGSK
PLNIALAQKP
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgaatatagcagccaagtaccgccaggcctccctgtacgtgggtgacctccatgcggac
gtcaccgaggacctgctgttcaagaagttcagcgccgtagggcccgtgttgtccatccgc
atctgcagggacctggtcacccgccgctccctgggctacgcctatgtgaactttctgcag
ctggcagatgcccaaaaggccctggacaccatgaactttgacctgataaagggcaaatcc
atccgtctcatgtggtctcaacgtgacgcctacttaaggaaatctggaattgggaacgtg
ttcatcaagaatctggacagatccattgataacaaaacactttatgaacacttttcagcg
tttgggaagatcctgtcctccaaggtgatgagtgatgatcacggctcccggggctatgca
ttcgtgcactttcaaaaccagattgctgccgacagggccatcgaggagatgaatggggca
ctgcttaaggactgcaggctgtttgttggcagattcaaaagccgcaaagatcgagaagcc
gagtttcaaaacaaagcccatgaattcaccaatgtttacatcaaaaatttcggagatgag
atggatgatgagagactaaaggaagttttcagcaagtacggcaaaaccctgagtgttaag
gttatgacagattccagtggaaaatccaaaggctttggctttgtgagttttgatagccat
gaggctgccaaaagggctgttgaagaaatgaatggaaaggacataaacggacagctgctt
tttgtaggccgggcacagaagaaagcagagcgacaggctgagttaaagcaaatgtttgag
cagctgaaacatgaaagatttcggcggtgccagggtgcgaagctctatattaagaacctg
gatgagaccattgatgatgaaaaactgcggagggaattttcttcatttggatcaattagc
agggttaaggtaatgcaggaagaagggcgaagcaaagggtttggcttgatctgcttctcc
tctgcggaggaggccactaaagcaatgacggagatgaatggccgcatcttaggctccaag
ccactcaacatcgccctggcccagaaaccctag
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