Bubalus bubalis (water buffalo): 102408758
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Entry
102408758 CDS
T05912
Symbol
SHANK1
Name
(RefSeq) SH3 and multiple ankyrin repeat domains protein 1 isoform X3
KO
K15009
SH3 and multiple ankyrin repeat domains protein
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub04724
Glutamatergic synapse
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09150 Organismal Systems
09156 Nervous system
04724 Glutamatergic synapse
102408758 (SHANK1)
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
SAM_1
Ank_5
SH3_2
SAM_2
PDZ_6
PDZ
SH3_1
SH3_9
FERM_f0
SAM_PNT
Motif
Other DBs
NCBI-GeneID:
102408758
NCBI-ProteinID:
XP_044787288
LinkDB
All DBs
Position
18:complement(56217949..56269371)
Genome browser
AA seq
2170 aa
AA seq
DB search
MTHSPASSEDEERHSASECPEGGSESDSSPDGPGRGPRGTRGRGSAAPGSLASIRGLQSR
SMSVPDDAHFSMMVFRIGIPDLHQTKCLRFNPDATIWTAKQQVLCALSESLQDVLNYGLF
QPATSGRDANFLEEERLLREYPQSFEKGVPYLEFRYKTRVYKQTNLDEKQLAKLHTKTGL
KKFLEYVQLGTSDKVARLLDKGLDPNYHDSDSGETPLTLAAQTEGSVEVIRTLCLGGAHI
DFRARDGMTALHKAACARHCLALTALLDLGGSPNYKDRRGLTPLFHTAMVGGDPRCCELL
LYNRAQLGISDENGWQEIHQACQRGHSQHLEHLLFYGAEPGAQNASGNTALHICALYNKE
TCARILLYRGANKDVKNNSGQTPFQVAVIAGNFELGELIRNHREQDVVPFQESPKYAARR
RGPPGTGLTVPPALLRANSDTSMALPDWMVFAAPGTSSAGAPGPTAGPQGQTQPAAPSAK
LSSGTLRSASSPRGARARSPSRGRHPEEAKRQPRGRPSSSGTPREGPAGGTGGSGGPGGS
LGSRGRRRKLYSAVPGRSFMAVKSYQAQAEGEISLSKGEKIKVLSIGEGGFWEGQVKGRI
GWFPSDCLEEVANRSQEAKQESRSDKAKRLFRHYTVGSYDSFDAPSDYIIKEKTVLLQKK
DSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQN
VVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDMDEAVHKKAPQQAKRLPPPAISLRSKSM
TSELEEMVSPWKKKSEYEQQPPPMPSMEKKRTVYQMALNKLDEILAAAQQTISASESPGP
GGLASLGKHRPKGFFTTESSFDPHHRSQPSYERPSYLPPGPGLMLRQKSIGAAEDDRPYL
APPAMKFSRSLSVPGSEDIPPPPTTSPPEPPYSTPPAPSSSGRLTPSPRGGPFNPSSGGT
HPASSPASFDGPAPPDTRIGSREKSLYHSGPLPPPHHHPPHHHHHHAPPPQPHHHHAHPP
HPPEMETGGSPDDPPPRLALGPQPSLRGWRGGGPSPTPGALSPSHHGSGGGAGGPSQAPA
LRYFQLPPRAASAAMYVPARSGRGRKGPLVKQTKVVEGEPQKGGGLPPAPSPTSPASPQP
PPPPPPAAAAPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPSQPEAAGGGGGGSS
APSPAPAVSPVPPPPSPVPTPASPSGPATLDFTSQFGAALVGAARREGGWQNEARRRSTL
FLSTDAGDEDGGDSSLGPGAPPGPRLRHSKSIDEGMFSAEPYLRLESAGAGSGSAYAGYA
AGGRAYGGSSAFTSFLPPRPLVHPLTGKALDPASPLGLALAARERALKESSEGGGPPQPP
PRPPSPRYEAPPPTPHHHSPHAHHEPVLRLWGASPPDPARRELGYRAGLGSQEKSLPASP
PAARRSLLHRLPPTAPGVGPLLLQLGPEPPAPHPGISKPWRSGAPPEEPERLPLHVRFLE
NCQPRAGGAGGRGPPSEDGPGVPPPSPRRSVPPSPTSPRGSEENGLPLLVLPPPAPSVDV
EDGEFLFVEPLPPPLEFSNSFEKPESPLTPGPPLPLPDPPIPTTPLPPVPPPAVAAAPPT
LDSTASSLTSYDSEVATLTQGAPAAPGDPPPPGPPAPAAPAPPAPQPGPDPPPGTDSGIE
EVDSRSSSDHPLETISSASTLSSLSAEGGGGAGGGTGGVGGSGGASVAGGPELLDTYVAY
LDGQAFGGSGTPGPPYPPQLMTPSKLRGRALGAGGGLRPGPGGGLRDPITPTSPTVSVTG
AGTDGLLALSGCPGSSTAGVAGGPVAVEPEGPPVPLPSASSLPRKLLPWEEGPGPPPPPL
PGPLAQPQASALATVKASIISELSSKLQQFGGSSAAGGALPWARGGSGGSGDSHHGGASY
VPERTSSLQRQRLSEDSQSSLLSKPVSSLFQNWSKPPLPPLPTGTAVSPSAAAAPGATSP
SASSSSTSARHLQGVEFEMRPPLLRRAPSPSLLPASEHKVSPAPRPSSLPILPSGPLYPG
LFDIRGSPTGGAGGSADPFAPVFVPPHPGMSGGLGGALSGASRSLSPTRLLSLPPDKPFG
AKPLGFWTKFDVADWLEWLGLAEHRARFLDHEIDGSHLPALTKEDYVDLGVTRVGHRMNI
DRALKFFLER
NT seq
6513 nt
NT seq
+upstream
nt +downstream
nt
atgacccacagccccgcgtcaagcgaggacgaagaacgccacagtgccagcgagtgtccc
gaggggggctcagagtccgacagctccccagacgggcccgggagaggcccccgggggacc
cggggccggggcagcgcagcacctggtagcctggcctcgatccgaggcctccagagccgc
tccatgtccgtcccagacgacgcccacttcagcatgatggtttttaggattggcatccct
gaccttcaccagacaaaatgcctgcgcttcaaccccgatgccaccatctggacggcaaag
cagcaggtgctctgtgccctgagcgagagcctccaggacgtgctcaactacggcctgttc
cagccagccacctcgggccgggacgccaacttcctggaggaggagcggctgctgcgggag
tacccccagtccttcgagaagggggtgccctacctggagttccgatacaagacccgtgtt
tacaagcagaccaacctggatgagaagcagctggccaagttgcacacgaagacggggttg
aagaagttcctggagtacgtgcagctcgggacatctgataaggtggcacggctgctggac
aaggggctggaccccaattatcatgactcagattcaggagagacccccctgacgctggct
gctcagaccgaaggctccgtagaggtgattcgaaccctatgcctgggcggggcgcacatt
gatttccgggcccgggatggcatgaccgcgctacacaaggccgcctgtgcccgccactgc
ctcgctctgacggcgctcctggatcttgggggctcccccaactacaaggaccgccgaggg
ctgactcccctgttccacacggctatggtggggggtgacccccgctgttgcgagctactc
ctgtacaacagggcccagctgggcatatctgatgagaacggctggcaggagattcaccag
gcctgccagcggggtcactctcagcatctggaacatctgctcttctacggagctgagcct
ggagcccagaacgcctcggggaacacggccctacacatctgtgccctctacaataaggag
acgtgtgctaggatccttctctatcgaggggccaacaaggatgtcaagaataacagtgga
cagacccccttccaggtggcagtgatcgctgggaattttgaactcggggagctgatccga
aaccatcgagaacaggacgtggtgcccttccaggagtcccccaaatacgcagcccggcga
cggggacccccgggcacagggctgacggtgccccccgcactgctgcgggccaacagtgat
accagcatggccctgcccgactggatggtgttcgccgccccaggaacctcgtccgcaggg
gcccccggccccaccgcagggccccagggccagacacagcccgccgcccccagcgccaag
ctcagcagcgggaccctgcgaagtgccagcagcccccggggcgcccgggcccgctcccca
tcccgcgggaggcaccctgaggaggccaagcgccagccccgtggacggcccagctccagt
gggacaccccgggaagggccagccgggggcacggggggctccgggggccccgggggctcc
ctgggcagccgcgggagacgcaggaagctctactcggcggtccccggacgctccttcatg
gctgtgaagtcctaccaggcccaagccgagggggagatctccctgagcaagggcgaaaag
atcaaagtgcttagcatcggggaaggaggcttctgggaaggccaggtcaaaggtcgcatt
ggctggttcccctctgactgcctggaagaggtggccaaccgctcccaggaagcaaagcaa
gaaagccgaagtgacaaggcaaagagactcttccggcattataccgtgggctcctacgac
agctttgatgccccaagcgattacatcatcaaagagaagacagttctgctgcagaagaag
gacagtgaggggtttgggttcgtgctccggggcgccaaggcgcagacccccatcgaggag
ttcacccccaccccagccttcccggcactgcagtatctggagtcagtggacgagggcggc
gtggcatggcgggctggactgcgaatgggagacttcctcatcgaggtgaacgggcagaac
gtggtgaaggtcggccaccggcaggtggtgaacatgatccgccaagggggcaacacgctg
atggtcaaggtggtgatggtcaccaggcacccggacatggatgaagctgttcacaagaaa
gcaccccagcaagctaagcggctcccgcccccagccatctccttgcgttccaagtctatg
acctccgagctggaggagatggtctccccctggaagaagaagagtgagtacgagcagcag
ccgccgccgatgcccagcatggagaaaaagaggactgtgtatcagatggctctcaacaaa
ctggatgaaatcttggcagcagctcagcagaccatcagtgcaagcgagagtcctgggcct
ggtggcctggcgtccctgggtaaacaccgacccaaaggcttctttaccactgagtcgagc
tttgatccccaccaccgctcccagccaagttatgaacgtccttcctacctgcctcctgga
cccgggctcatgctccgacaaaaatctattggggctgcagaggacgatagaccctaccta
gcacccccagccatgaagttcagccgcagcctgtctgtgcctggttcggaggacatcccc
ccgccgcccaccacgtccccaccagagcccccctacagcacgcctccagccccgtcctcc
tctgggcgcctcactccttctccccggggtgggcccttcaaccccagctcaggtggcacc
cacccggcctcgtccccggcgtccttcgatgggcctgctccccctgacacccggataggg
agccgagagaagagcctgtatcacagcgggcccctgcccccaccccaccaccacccgccc
caccaccaccaccaccacgccccgcccccccagccccaccaccaccatgcccacccgcct
caccccccggagatggagactggcggctcccccgacgaccccccaccccgcctggctctg
gggccccagcccagcctacgaggctggcggggcggcgggcccagcccgaccccaggtgcc
ctgtccccgtcgcaccacggcagcgggggcggcgcgggcggcccctcccaggctcccgcg
ctgcgctacttccagctgcctccgcgggcggccagcgcagccatgtatgtgcccgcccgt
tccggccgcgggcgcaagggcccgctggtcaagcagaccaaagtcgtcgaaggcgagccc
cagaagggcggcggcctcccgcctgccccctcgcccacgtctccggcgtccccgcagccg
ccgccgcctccgccgccggccgcggccgccccgtcggaaaagaactccatccccatcccc
accatcatcatcaaggcgccgtccaccagtagcagcggccgcagcagccaggggagcagc
accgaggcggagcccccgagccagcccgaggccgcgggcggcggcggcggcggctcttcc
gcgcccagccccgccccggccgtgtcgcccgtgccgccgcccccctcgcctgtgcccacc
cctgcctcgcccagcggcccggccaccctggatttcaccagccagttcggagcggccctg
gtgggggcggctcggagggaagggggctggcagaacgaagcccgccggcggtccacgctc
ttcctctccaccgacgcgggggacgaggacggcggcgacagctcgctgggcccaggggcg
cctccgggcccccggctgcgccactccaagtccatcgacgaaggcatgttttcggccgag
ccctacctccggctggagtcggcgggcgccggcagcggcagcgcctacgcgggctacgcg
gccggcggccgagcctacgggggcagcagcgccttcaccagcttcctgccaccgcgaccc
ctggtccacccgctgaccggcaaggccctggacccggcctccccactcgggctggccctg
gccgcccgggagcgggcgctgaaggagtcctcggagggcggtgggcccccccagccccct
ccaaggcccccatcgccccgctacgaggccccgccacccaccccgcaccaccactcgccc
cacgcccaccacgagccagtgctgcgcctctggggagcctcgcccccggacccggcccgc
cgggagctggggtaccgggcagggctgggcagccaggagaagtcccttccggccagccca
ccggcggcccgacgctccttgctgcaccgcctgcctcccacagctcccggggtcgggccc
ctcctgctgcagctggggcccgagccccccgccccgcaccccgggataagcaagccctgg
cgatccggcgcccccccggaggagcccgagcggctgcccctccacgtgcggttcctggag
aactgccagccccgggccggcggggcgggtggaagggggcccccctcggaggacgggccg
ggggtcccgccgcccagcccgcgccgctctgtgccgccctcgccgacctccccgcggggc
agtgaagagaacgggctccccctgctggttctgccgccgcccgccccctcggtggacgtg
gaagacggagaattcctctttgtggaaccgctgcccccgcccctcgagttttccaacagc
ttcgagaagccggagtcgcctctcacgccggggcctcccctcccgctgccggacccaccc
atcccgaccaccccattgccccctgtgccgcccccggccgtggccgccgcccctcccacc
ctggactcgaccgcatccagcctgacttcctatgacagcgaggtggcaaccctgacccag
ggggcccccgcggctcctggggacccccctccgccaggccctcccgccccagccgctccg
gctcccccagccccccagcctggcccagaccctcccccgggcacggattctggtattgag
gaggtggacagtcggagcagcagcgaccaccccctggagaccatcagcagcgcctccacg
ctgagcagcctgtcggctgaaggcgggggcggcgcagggggcggaactggcggcgttgga
ggcagtggtggcgccagcgtggcgggtggaccagagctcctggatacctacgtggcctac
ttggatggccaggccttcgggggcagcggcactcctggccccccataccccccgcagctc
atgactccctctaagctccggggccgggcgctcggggccggcggaggcctgcggccgggc
cccggtgggggactccgagaccctatcactcccaccagccccactgtctcggtgacgggg
gcgggaaccgatgggctgctggccctgagcggctgtccgggatcctcgacggcaggtgtg
gctggcggccccgtggctgtagagccggaaggtccgccagtgcccttgccgtcggcctcc
tccctccctcgaaagctgctgccctgggaggagggcccgggcccgccgccgccccctctg
ccggggcccttagcccaacctcaggcctcagccttggccactgtaaaagccagcatcatc
agtgaactcagctccaagcttcagcagtttgggggctcctcggcagctggtggcgctctg
ccctgggcccggggaggcagcgggggaagcggggacagccaccacgggggagccagctac
gtccccgagcggacttcctccctgcagcggcagagactctctgaagactcccagtcctcg
ctcctctccaaacccgtgagcagcctgtttcagaactggtccaaaccacctctgccgcca
cttcccacgggaaccgcggtgtccccttcagccgctgcagccccgggggccacctcccca
tcggcttcctcctcctccacgtccgcccgccacctccagggcgtggagttcgagatgcgc
ccacctttgctccgccgggcccccagcccctcattgctgcctgcctcggagcacaaggtc
agccctgcgccccggccctcgtccctacccatcctgccttccggacccctctatccgggc
ctctttgacatccgaggctcccccaccggaggggcaggaggctcggccgaccccttcgcc
cccgtctttgtacctccgcaccccgggatgtccgggggtctcggcggggccttgtcaggg
gcctcccgctccctctcacctacccgcctgctttccctgcccccggacaagccattcggc
gctaaacctctgggcttctggaccaagttcgatgtggctgactggctagagtggctgggc
ttggccgaacaccgggcccggttcctggaccatgagatcgatggctcccaccttcccgcc
ttgaccaaggaggactacgtcgatttgggggtgaccagggtgggacaccgcatgaacatc
gaccgggctctcaagtttttcctggagaggtga
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