Bubalus bubalis (water buffalo): 102409349
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Entry
102409349 CDS
T05912
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03440
Homologous recombination
bbub03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102409349 (PALB2)
03460 Fanconi anemia pathway
102409349 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbub03400
]
102409349 (PALB2)
DNA repair and recombination proteins [BR:
bbub03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
102409349 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
102409349 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
102409349
NCBI-ProteinID:
XP_006071231
LinkDB
All DBs
Position
24:20955722..20979184
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AA seq
1195 aa
AA seq
DB search
MLFLLAAGQMEEPPGKTLSCEEKEKLKEKLAFLKREYTKTLARLQRAQRAEKFKNSLRRT
VEEQDSSLQQEVSTQLTHAEPKNTVSPRDTLQINTHIDEETGEKTPSSLDVKPESFSSGR
VSVEGSRIQGSDDNQEHFPFRVNGPDAKKRQNKLLGRRKKEERTYISQERESLSDIDSLI
LSGKRLKEQEKINRENPRTPVTELRTYPLSSPKCAIPNSPAPVTETNVGSVLILPSTKPQ
RDVDALLRGNDFPRATTLPLPTPSNSSNGQRLEHKCPKSNCELTTHSLRNISSASPVNLE
VQKKKMTVSTDNPEVNKAGSTSGQAARSPNLEADNSCFINELTCDNLVENENRNLEEQNH
TEMSLKSPNDALGGRNESLLEKELLSQSKNLSLEVISPVSTEDQIHSCTVLEGLLFPAEY
YVRTTRHMSGCQRKVALEAVIQSHLGVRKKGFKNKSTKSAKKFNVSNEKTKQSEIKVSDK
HAEQPSSRSPQKPLSLTEVSFSTDSTEDDFSRKTVTKPSGKKCRGKRKSACTSPLDQHEL
LLPATGTSGVKKSKEEIALHKNQNEKAIIHSKKRIKGKEGHCQKEDFLCYSNYAYFSSDD
DAFSAPFRKNRMLSLKHLSSFLKITDFQLPDEDFGSLKLEKLKSCSKKLMETFGSKVHGE
GHLKGESYIVVEEPSPKQSNIEKEGMEAELITLPGKAHPKMPSQRSQPRGKDLSSSILLF
TPLNSVASDDNDRLTAELCSPAFPVLGATPAFGSQAHRGKVSAEVVGQTCSPPRLSHLKA
TVSLAGNRKQGNSWSSPLKLDSSQHVAGRAGQPSCDPDAGPQATTLPTESFTYEASQLQE
SQRHSAEQTEIAEVPAWDSLNPGTLQLVSKLKNPSGSCSVDVSATWWEIAGFKEPCIVTA
CEYVVSLWKPLDAWQWEKIYSWHFTEVPVLQIVAVPDVCNLVCVALGNLEIREIRALLCS
PDGKSEKQVLLSSGNIKAVLGLAKRRLVSSSGTLCDQQVEMMTFAEDGGSKEKQLLMPPE
ETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLL
FVVLSHPCAKENELSGSPVFQLIVINPKTTLSMGVMLYCLPHGQAGRFLEGDVKDHFAAA
VLTSGTIAVWDLLLGHCAALLPPVSGQNWSFVKWSGTDSHLLAGQKDGNIFVYRF
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgctctttttgttggccgccggccagatggaagagcctcctgggaaaaccctcagctgt
gaagagaaggaaaagttgaaagaaaaattagcattcctgaaaagggaatacaccaagaca
ttggcccgccttcaacgtgcccaaagagccgagaagtttaaaaattctcttaggagaaca
gtggaagaacaagattcctcactccagcaagaagtttcaacacaactaacccacgcagaa
cctaaaaatacagtatctcctcgtgacacgttgcaaatcaacacccatatcgatgaagaa
actggagaaaagacacccagctcacttgacgttaagcctgagtcgtttagctctggacgt
gtctcagtggaaggatcacgcatacaaggatcagatgataatcaggaacattttcctttc
agggtcaatggccctgatgctaagaaaaggcagaataagctgctggggagaagaaagaaa
gaggagagaacatatatttcacaggagagagaatctctctctgacattgattcgctcata
ctctctggaaaaagactaaaagaacaggaaaaaatcaatagagaaaatcctagaacacct
gtaactgaactaagaacttaccccctttcaagtcctaaatgtgccattccaaattctcca
gcaccagttacagaaactaatgtagggagtgtattaattctaccaagcaccaaaccacag
agagatgttgatgccctccttagaggaaatgatttccccagggcgactactcttcctctg
cctacaccttcaaatagcagtaacggacagcgcctcgaacacaagtgtcctaaaagtaac
tgtgaacttactactcacagcttaagaaacattagctctgcttcacctgtaaacttagag
gtacagaagaaaaaaatgactgtctctacagataacccagaggtaaacaaagctggaagt
acaagtggccaggcagctagaagtcctaacttagaggcagataattcatgttttataaat
gaactcacttgtgataacttagtggaaaatgaaaaccgaaacttagaagaacaaaatcac
acagagatgtctcttaaatctcccaatgatgctctcggtggtagaaatgaaagtcttctg
gaaaaagaacttctaagtcagtctaagaatcttagcctggaagtaatttctcctgtttct
acagaagatcaaatacattcttgcacagtgcttgaaggccttctctttcctgcagaatat
tacgttaggacaacacggcacatgtcaggttgccagaggaaagtagcactggaggctgta
attcagagtcatttaggtgtcagaaaaaaaggctttaaaaataagagtacgaaatctgct
aaaaaatttaacgtttccaacgaaaaaactaagcaaagtgaaattaaggtgtctgacaaa
cacgcagaacaaccaagttcaagaagtccccagaaaccactctcattaactgaagtcagc
ttttccactgactccacagaagatgacttttctaggaagacagttaccaagccatcaggt
aaaaaatgcagaggaaaaagaaagtcagcatgcacctctccgttagatcagcatgaacta
cttttgccagctactggcacatcaggtgttaagaagtccaaggaagaaattgccttgcac
aaaaatcagaatgaaaaggcaattattcacagtaagaagagaattaaaggaaaggaaggt
cactgtcaaaaagaggacttcctttgttacagtaattacgcttatttctcttcggatgat
gatgctttcagtgctccatttcgtaagaacagaatgctaagtttaaagcatctatcgtct
tttctcaaaatcacagactttcagttacctgacgaagactttgggtctcttaagcttgaa
aaactgaagtcctgctcaaaaaagctgatggagacttttggatcaaaagtacatggagag
gggcatcttaaaggggaaagttatattgttgtggaggaaccaagccctaaacaaagcaat
atagaaaaggagggcatggaagcggaactaattaccctaccaggaaaggcacatcctaaa
atgccaagccaaagaagccagcctcggggaaaggacctttcttcatccattttacttttt
actcctttgaattctgttgcctctgatgataatgacagactgacagcagagctgtgctca
cctgctttccccgtgttaggcgctactccagcttttggctcccaagcccacagaggaaag
gtatctgcagaggtggttggacaaacctgctctccaccccgtctttctcacttaaaagcc
acagtcagcctggctggcaatcgtaaacaaggcaacagctggagcagccccttgaaatta
gatagcagccagcatgtggcaggaagagcaggacagccttcctgtgaccctgacgctggt
ccccaagcaacaactctgcccaccgagtctttcacctatgaagcaagtcagctccaggaa
tcacagagacattctgctgagcagactgaaatagcagaggttcctgcttgggatagctta
aacccgggcaccctacagctggtttcaaagttaaagaatccttcaggttcttgttctgtg
gatgtgagtgccacgtggtgggaaatagctggtttcaaagagccgtgtatcgttactgct
tgtgaatacgtcgtttctctttggaaacctctggatgcttggcagtgggaaaaaatttat
tcctggcacttcacagaggttccggtattacagatagttgcagtgcctgatgtttgcaat
cttgtgtgtgtggctttgggaaatttggaaatcagagaaatcagggcactactttgttct
cccgacggtaaaagtgaaaagcaagtgctcctgagttctggaaatataaaagctgtgctt
ggcctggcaaagaggaggctcgtcagtagcagtgggaccctttgtgatcagcaagtcgaa
atgatgacatttgccgaagatggaggaagcaaagaaaaacagcttttgatgccccctgaa
gagaccatactaacttttgctgaggttcaagggatgcaggaagctctgcttggtaccact
ataatgaacaacattgttatttggaacttaaaaactggtcagctcctgaaaaagatgcac
atcgatgattcctaccaagcttcggtctgtcacaaagcttactctgaaatggggctcctg
tttgttgttctaagtcacccttgtgccaaagagaacgagttatcgggaagccctgtgttt
cagctgattgtgattaacccgaagacaaccctgagtatgggtgtgatgctctactgcctt
cctcacgggcaagctggaaggttcctggaaggcgacgtgaaagaccatttcgcagcagca
gtattgacttctggaaccattgccgtttgggacttactcttgggtcactgcgctgctctc
cttcctcctgtctctggccagaattggtcttttgttaaatggtcaggtacagattctcat
ttgttggctggacaaaaagatggaaatatatttgtataccgcttctaa
DBGET
integrated database retrieval system
