Bubalus bubalis (water buffalo): 102409759
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Entry
102409759 CDS
T05912
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
102409759 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
bbub01009
]
102409759 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
bbub04515
]
102409759 (PCDH1)
Protein phosphatases and associated proteins [BR:
bbub01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
102409759 (PCDH1)
Cell adhesion molecules [BR:
bbub04515
]
Cadherins
Protocadherins
102409759 (PCDH1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
102409759
NCBI-ProteinID:
XP_006062711
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Position
9:58174612..58201014
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AA seq
1237 aa
AA seq
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MDCRARGRRCPESALLILEPAPMGPLRHSPGPGERRLLLPTLLLALLLLLAPSPGHATRV
VYKVAEEQPPNTLIGSLAADYGFPDVGHLYKLEVGAPYLRVDGKTGDIFTTETSIDREGL
RECQNQLPGEPCILEFEVSITDLVQNGSPRLLEGQIEVQDINDNTPNFASPVITLPIPEN
TNIGSLFSIPVASDRDAGPNGVASYELQVGPEAQELFGLQVAEDQEGKQPQLIVMGNLDR
ERLDSYDLTIKVQDGGNPPRASSALLRVTVLDTNDNAPKFERPSYEAELSENSPIGHSVI
QVKANDSDQGANAEIDYTFHQAPEVVRRLLRLDRNTGLITVQGPVDREDLSTLRFSVLAK
DRGTNPKSARAQVVVSVKDMNDNAPTIEIRGIGLVTHQDGMANISEDVAEETAVALVQVS
DRDEGENAAVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYEKVKDYTIEIVAVD
SGNPPLSSTNSLKVQVVDVNDNAPVFTQSVTEVAFPENNKPGEVVAEVTASDADSGSNAE
LVYSLEPEPAAKGLFTISPETGEIRVKTSLDREQRESYELKVVAADRGSPSLQGTATVLV
NVLDCNDNDPKFMLSGYNFSVMENMPALSPVGMVTVIDGDKGENARVQLTVEQDNGDFVI
QNGTGTILSSLSFDREQQSTYTFQLKAVDGGVPPRSAYVGVTINVLDENDNAPFITAPSN
TSHRLLTPQTRLGETVSQVTAEDIDSGVNAELTYSIAGGNPYGLFQIGSHSGAITLEKEI
ERRHHGLHRLVVKVSDRGKPPRYGTALVHLYVNETLANRTLLETLLGHSLDTPLDIDIAG
DPEYERSKQRGNILFGVVAGVVAVALLIALAVLVRYCRQREAKSGYQAGKKETRDLYAPK
PSSKVSKGNKSKGKKSKSPKPVKPVEDEDETGLQKSLKFNLMSDAPGDSPRIHLPLNYPP
GSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQELPPANTFVGTGDTTSTGSEQYSDY
SYRTNPPKYPSKQLPHRRVTFSATSQAQELQDPSQHSYYDSGLEESETPSSKSSSGPRLG
PLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECSEFGHSDTCWMPGQSS
PSRRTKSSALKLSTFVPYQDRGGQEPAGAGSPSPPEDRNTKTAPVRLLPSYSAFSHSSHD
SCKDSATLEEIPLTQTSDFPPAATPASAQTAKREIYL
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggactgcagggcccgcggccggcgctgcccagagtcggccctcctgattctggagcct
gccccaatggggcccctgaggcacagcccaggccccggggagcgacgtctgctgctgccc
accctgctgctagcactgctgctgctgctggctccgtccccgggccatgccactcgggtg
gtgtacaaggtggctgaggaacagccgcccaataccctcatcgggagcctcgccgctgac
tacggttttcccgacgtgggccacctgtacaaactagaggtgggcgccccgtacctgcgg
gtggatggcaagacgggcgacatctttaccaccgagacctctatcgaccgtgaggggctc
cgtgaatgccagaaccagctccctggtgagccctgcatcctggagtttgaggtgtctatc
acggaccttgtgcagaatggcagcccccggctgctggagggccagatagaggttcaggac
atcaatgacaacacgcccaacttcgcctcgccagtcatcacgctgcccatccccgagaac
accaacatcggctcactcttctccatcccggtggcttcggatcgagatgctggccccaac
ggtgtggcgtcatatgagctgcaggtggggcccgaggcccaggagctatttgggctgcag
gtggcagaggaccaggaggggaagcagccgcagctcatcgtgatgggcaacctggaccgg
gaacgcctggattcttacgacctcaccatcaaggtgcaggatggtggcaaccccccacgt
gccagcagcgccctgcttcgggtcaccgtgctcgacaccaatgacaatgcccccaagttc
gagcggccgtcctacgaggctgagctgtctgagaacagccccataggccactcagtcatc
caggtgaaggccaacgactcagaccaaggtgccaacgcagaaatcgactacactttccac
caggcacctgaagtcgtgagacgccttctgcgactggacaggaacaccggacttatcact
gtgcagggccccgtggaccgtgaggacctgagcaccctgcgtttctcggtgcttgccaag
gaccgtggcaccaaccccaagagtgcccgagcccaggtggtggtgagtgtgaaggacatg
aacgacaatgcacccaccattgagatccgtggcatagggctggtgacgcaccaggacggg
atggccaacatctcagaggatgtggcggaagagacagctgtggccctggtgcaggtatct
gatagagacgagggagagaatgcggctgtcacctgtgtggtagcaggtgatgtgcccttc
caactccgccaggccagcgagacgggaagtgacagcaagaagaagtacttcctgcaaacc
accaccccgctcgactatgagaaggtcaaagactacaccatcgagattgtggccgtggac
tctggcaacccgccactctccagcaccaattccctcaaggtgcaggtggtggacgtcaat
gacaatgcgcctgtcttcacccagagcgtcactgaggtcgctttcccagaaaacaacaag
ccgggtgaagtggttgctgaggtcactgccagtgacgccgactcgggctccaatgctgag
ctggtttactctctggagcctgagccagctgccaagggcctcttcaccatctcacctgaa
actggagagatccgggtgaagacatccctggatagggaacagagggaaagctatgagttg
aaggtggtggcagccgaccggggcagccctagtctccagggcacagccaccgtcctcgtc
aacgtgctggactgcaatgacaacgaccccaagttcatgctgagtggctacaacttctca
gtgatggagaacatgccggcactgagtccagtgggcatggtgactgtcattgatggggac
aagggggagaacgcacgggtgcagctcacggtggagcaggacaatggtgactttgttatc
cagaacggcacgggcaccatactctccagcctgagcttcgatcgggagcagcaaagcacc
tataccttccagctgaaagctgtggacggtggtgtcccacctcgctcagcttacgttggt
gtcaccatcaacgtgctggatgagaacgacaacgcgccttttatcactgccccttccaac
acctcgcaccggctgctgaccccccagacccgtctgggtgagacggtcagccaggtgaca
gctgaggacattgactctggtgtcaatgctgagctgacctacagcatcgctggtggcaac
ccttatggacttttccagattgggtcacattctggtgccatcaccctggagaaggagatt
gagcgccgccaccacgggctgcaccgcttagtcgtgaaggtcagtgaccgcggcaagccc
ccacgctacggcacagccttggtccacctgtatgtcaacgagactctggccaaccgcacg
ctgctcgagaccctactgggccacagcttggacacgccgctggacatcgacatcgctggg
gacccagaatacgagcgctccaagcagcgcggcaacatcctctttggcgtggtggctggt
gtcgtggccgtggccttgctcatcgccctggctgtgctcgtgcgctactgccggcaacgg
gaggccaagagtggctaccaggctggcaagaaggagaccagggacctgtacgcccccaag
cccagcagcaaagtttccaagggcaacaaaagcaagggcaagaagagcaagtctcccaag
cctgtgaaaccggtggaggatgaggatgagaccggcctgcagaagtctctcaagttcaac
ctgatgagcgacgcccccggggacagtccacgcatccacctgcccctcaactacccacca
ggcagccctgacctgggtcgccactatcgctctaattccccactgccttccatccagttg
cagccccagtcgccctccgcctccaagaagcaccaggtggtgcaggaactgccgcctgca
aacacgttcgtgggcaccggggacacgacgtccacgggctctgagcagtactccgactac
agctaccgcaccaacccccccaaataccccagcaagcagttacctcaccgccgcgtcacc
ttctccgccaccagccaggcccaggagctccaggacccgtcccagcatagttactacgat
agtggcctggaggagtccgagacgccatccagcaagtcgtcgtcagggccccgactgggt
cccctggctctgccggaggatcactatgagcgcaccacccctgatggcagcataggagag
atggagcaccccgagaatgacctgcgccctctgcctgatgtcgccatgacgggcacctgt
acccgcgagtgcagtgagtttggccactccgacacatgctggatgccaggccagtcgtct
cccagccgccggaccaagagcagcgccctcaaactctccaccttcgtgccttaccaggac
cgaggagggcaggagcctgcgggcgccggcagccccagccccccggaagaccggaacacc
aaaacggcccccgtgcgcctcctgccctcctacagtgccttctcccacagtagccatgat
tcctgcaaggactcggccaccttggaggaaatccccctgacccagacctcggacttccca
cctgcagccacaccggcatctgcccagacggccaagcgcgagatctacctgtga
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