KEGG   Bubalus bubalis (water buffalo): 102409861
Entry
102409861         CDS       T05912                                 
Symbol
TAF5L
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X2
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
bbub  Bubalus bubalis (water buffalo)
Pathway
bbub03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:bbub00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    102409861 (TAF5L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bbub03021]
    102409861 (TAF5L)
   03036 Chromosome and associated proteins [BR:bbub03036]
    102409861 (TAF5L)
Transcription machinery [BR:bbub03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     102409861 (TAF5L)
   Coactivators
    SAGA/TFTC/STAGA complex
     102409861 (TAF5L)
Chromosome and associated proteins [BR:bbub03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     102409861 (TAF5L)
    STAGA complex
     102409861 (TAF5L)
    TFTC complex
     102409861 (TAF5L)
    SAGA complex
     102409861 (TAF5L)
    SLIK complex
     102409861 (TAF5L)
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd TFIID_NTD2 WD40_MABP1-WDR62_2nd EIF3I WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR75_1st WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_SCAP ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_EIPR1 WD40_RFWD3 PEP5_VPS11_N WD40_like PROPPIN eIF2A Ge1_WD40 WD_LRWD1 Nbas_N Beta-prop_IP5PC_F Mala_s_1-like vATP-synt_AC39
Other DBs
NCBI-GeneID: 102409861
NCBI-ProteinID: XP_025140268
LinkDB
Position
4:complement(121154460..121186228)
AA seq 591 aa
MVMKRVRTEQIQMAVSCYLKRRQYGDADGPLKQGLRLSQSTEEMAASLTVQSESGCANIV
SAAPCQAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNLIQNSPKSTVES
FYSRFHGMFLQNASQKDVIEQLQTTQTIQDILSNFRLRAFLDNKYVVRLQEDSYNYLLRY
LQSDNNTALCRILAWHIHLDVQPAKRTDYQLYTSGSSSRGEGGGLEPADMPAPILQNEAA
LELLQESIKRVRDGPPSLTTIYFYAFYNTEQLLNTAEVSPDSKLLAAGFDNSCIKLWSLR
SKKLKSEPHQVDVSRIHLACDFLEEEDDEDDNLGTEMKVLRGHCGPVYSTRFLADSSGLL
SCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPHSLYFASGSHDRTARLWSFDRTYP
LRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLAFSP
NGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLVASASMDNSVRVWD
IRSSHCSTPADGSSSELVGVYTGQMSNVLSVQFMACNLLLVTGITQENQEH
NT seq 1776 nt   +upstreamnt  +downstreamnt
atggtcatgaaacgggtccgcacggagcagatccagatggccgtgtcctgctacctcaaa
cgccggcagtacggggatgcggacggcccgctgaagcaaggcctgcggctgtcgcagagc
actgaggagatggccgccagcctcacagtccaatcagaatctggttgtgccaacatagtg
tccgcagccccttgccaggcagagccccagcaatatgaagtacagttcggacggctgcgg
aattttctcaccgattctgactcccagcacagccatgaagtgatgcctctcctctatcct
ctctttgtctacctccatctcaacctgatccagaacagtccgaagagcacagtggaaagc
ttttacagccgcttccatggaatgtttctgcagaacgccagccagaaggatgttatcgag
cagctccagaccactcagaccatccaggacatcctgtctaacttccggctgcgagccttc
ctggacaacaaatacgtggttcgtctgcaggaagacagctacaactaccttctccgctac
ctccagagtgacaacaacaccgcgctgtgcaggatccttgcctggcacatccatctggac
gtgcagcccgccaagaggacagactaccagctctacaccagtggtagctcctcccgcggc
gagggtggcggcctggagcccgccgacatgcccgcgcccatcctgcagaatgaggccgcg
ctggagctcctgcaggagagcatcaagcgcgtcagggacggccccccctccctcaccacc
atctacttctacgccttctacaacacggagcagctgctgaacactgcagaggtatccccg
gacagcaagctgctcgcagcaggctttgacaactcctgtataaaactgtggagtctgcgt
tccaagaagttaaagtccgaaccccatcaagtagatgtgtcccgcatccacttggcttgt
gatttcctagaggaggaggatgacgaggacgacaacttaggcacagagatgaaggtcctt
cggggacactgcgggccagtgtacagcaccaggttcctcgcagacagctcggggctgctc
tcctgctctgaagacatgtccatcaggtactgggacctgggcagcttcaccaacaccgtg
ctgtaccagggccacgcctaccccgtgtgggacctggacatcagcccgcacagcctgtac
ttcgccagcgggtcccacgaccgcacggcccggctgtggtcatttgatcggacgtaccca
ctgcgaatctacgccgggcacctggcagacgtggactgcgtcaagttccaccccaattca
aactacttagccacgggctcaaccgacaagacggtgcggctgtggagcactcagcagggg
aactccgtgaggctcttcacgggccaccgcggccctgtgctctccctggctttttccccc
aacggtaagtacctggcatcagcaggcgaggaccagcggctgaagctgtgggacttggcg
tccgggaccctctacaaagagctgcggggccacacggacaacatcaccagcctcaccttc
agcccagacagcagcctggttgcgtcagcgtccatggacaactccgtgcgtgtctgggac
atcagaagctcacactgtagcacacccgccgacggctcatccagcgagctcgtgggcgtc
tacaccggccagatgagcaatgtgctgagcgtgcagttcatggcctgcaacctcctgctg
gtgactggaatcacacaagaaaatcaggaacattga

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