Bubalus bubalis (water buffalo): 102409894
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Entry
102409894 CDS
T05912
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub01524
Platinum drug resistance
bbub03430
Mismatch repair
bbub05200
Pathways in cancer
bbub05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
102409894 (MSH6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
102409894 (MSH6)
09162 Cancer: specific types
05210 Colorectal cancer
102409894 (MSH6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
102409894 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbub03400
]
102409894 (MSH6)
DNA repair and recombination proteins [BR:
bbub03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
102409894 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
HORMA
MUM1-like_PWWP
WPP
Motif
Other DBs
NCBI-GeneID:
102409894
NCBI-ProteinID:
XP_006048106
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Position
12:29646983..29668373
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AA seq
1361 aa
AA seq
DB search
MSRQSTLFSFFPKSPAVNNANKAPVRASSGSSAAAAATRASPSPGGDAAWNEAGPEPLAG
TTSRAEARNLNGGLRKSASPAVPASSSCDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTFI
REKGKSARVHVQFFDDSPTRGWVSRRLLKPYTGSHSKEAQKGGHFYSAKPEILRAMQRAD
EALNKDKIKRLELAVCDEPSEPEEEEETEVGATYTSDKSEEENDIESEEEVRPKVQGSRR
SSRQVKKRRVISDSESDIGGSDVEFKPDTKEEASSDEISSGAGDSDSEGLDTPVKVAPKR
KRMVTGNGSLKRKSSRKEMPSATKRATGISSETKNTLSAFSVPQNSEPQAHVSGGCDDSN
RPTLWYHETLEWLKEEKRRDVHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQN
FDLVIFYKVGKFYEMYHMDALIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKV
ARVEQTETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLL
SLKEKEEESSGHTRVYGVCFVDTSLGRFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGN
LSTDTKMILKSSLSSSLQEGLIPGSQFWDAAKTLRTLLEEGYFTDKLNEDGGVMLPQVLK
GMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYVPLDSDMVHAT
RPGAVFAKANQRMVLDAVTLSNLEIFLNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLCA
PLCNPHAINDRLDAIEDLMVVPDKISEVVDLLKKLPDLERLLSKIHNVGSPLKSQNHPDS
RAIMYEETTYSKKKIIDFLSALEGFKVICKIIGIMEEVIDDFKSKILKQVLTLQTKSPEG
RFPDLTSELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRS
RIGCRTIVYWGIGRNRYQLEIPENFITRNLPEEYELKSTKKGCKRYWTKTIEKKLGNLIN
AEERRDASLKDCMRRLFYNFDKNYKDWQAAVECTAVLDVLLCLTNYSRGGDGPMCRPIIL
LPEEDTPPFLDLKGSRHPCITKTFFGDDFIPNDILIGCEEEEEENGKAYCVLVTGPNMGG
KSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETAS
ILRHATAHSLVLVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQN
VAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRK
AREFEKMTQSLRLFREVCLASERSTVDADAVHKLLTLIEEL
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacagagcacgctgtttagcttcttccctaagtctccagccgtgaataatgcc
aataaagcccccgtcagagcctcaagtggaagcagcgccgccgccgctgccacccgggcc
tccccttccccaggcggggatgcggcctggaacgaggccgggcctgagcccctagcgggt
accacgtcgcgggccgaggccaggaacctcaacggagggctgcggaagtcggcatcccct
gcggtccccgccagcagttcttgtgacttctcaccaggtgatttggtttgggccaagatg
gagggttacccttggtggccttgcctggtttacaaccacccttttgatggaacattcatc
cgtgagaaaggaaagtctgcccgagttcatgtacagttttttgatgacagcccaacacgg
ggctgggttagcagaaggctattaaagccatatacaggttcacattcaaaggaagcccag
aaaggaggtcatttttacagtgcaaagcctgaaatactcagagcaatgcaacgtgcagat
gaagccttgaataaagacaagattaagaggcttgagttggcagtatgtgatgagccctca
gagccagaggaggaagaagagacggaggtaggtgccacctacacatcagataagagtgaa
gaggaaaatgacattgagagtgaagaggaagtgaggccaaaggtgcaaggatccagacga
agtagccgacaagtaaaaaaacgaagggtcatatcagactctgagagtgacattggtggc
tctgatgtggaattcaagccagacactaaggaggaagcaagcagtgatgaaataagcagt
ggcgcgggggacagtgatagtgaaggcctggacacccctgtcaaagttgctccaaagcgg
aagagaatggtaactgggaatggttccctcaagaggaagagttcaaggaaggaaatgcct
tcagccaccaaacgagcaactggcatttcatcagaaaccaagaatactttgagtgctttc
tctgtccctcaaaattctgagccccaagcccacgttagtgggggatgtgatgacagtaat
cgccccactctctggtatcatgaaactttagagtggcttaaggaggaaaagagaagagat
gtgcacaggaggcggcctgatcaccctgattttgatgcatccacactctatgtgcccgag
gatttccttaattcctgtactcctgggatgaggaagtggtggcaaattaagtctcagaac
tttgatctggtcatattttataaagtggggaagttttatgagatgtaccacatggatgct
cttattggggtcagtgaactagggctggtattcatgaaaggcaactgggcccattctggt
ttccctgaaattgcatttggccgatactcagattccctggtccagaaaggctataaagta
gcacgagtagaacagactgagaccccagaaatgatggaggcacgatgccgaaaaatggca
cacatatctaagtatgacagagtggtgcggagggagatctgtaggatcattacgaagggt
acacagacctacagtgtgctggaaggtgacccctcggagaactacagtaagtaccttctt
agcctcaaagagaaagaggaggagtcttctggccacactcgcgtgtatggagtatgcttt
gttgatacctctctagggaggttcttcataggtcagttttcagatgatcgccattgttcc
aggtttaggactttagtggcacactatcctccagtacaagtcttatttgagaagggaaat
ctctcaacggatactaagatgattctcaagagttcgttatcctcttctcttcaggaaggt
ctgataccgggctcccagttttgggatgcagccaaaactttgagaactctccttgaagaa
ggatattttacagacaagttaaatgaggacggtggggtgatgctaccccaggtgcttaaa
ggtatgacctcggagtcagattctattggattgacaccaggagagaagagtgaattggcc
ctctctgctcttggtggttgtgtcttctacctcaaaaaatgccttattgatcaggagctt
ttatcaatggctaattttgaagaatatgttcccttggattctgacatggtccatgctaca
agacctggtgctgtctttgctaaagccaatcaacgaatggtgctagatgccgtgacatta
agcaacttggagatttttctgaatggaacaaatggttctactgaagggaccttgttagag
aagattgacacttgccatactccctttggtaaacggctcttaaagcagtggctttgtgcc
ccactctgtaaccctcatgcgatcaatgatcgcctggatgccatagaagacctaatggtt
gtgcctgacaaaatctctgaggttgtagaccttcttaagaagcttccagaccttgagaga
ctcctgagtaaaattcataatgttgggtctcccctcaagagccagaaccacccagatagt
agggctataatgtatgaagaaaccacatacagcaaaaaaaagattattgattttctttct
gctctggaaggattcaaagtaatatgtaaaattatagggattatggaagaagtcattgat
gactttaagtctaaaatcctcaagcaggtccttactctgcagacaaaaagtcctgaagga
cgctttcctgatttgacttcagaactgaaccgatgggatacagcctttgaccatgaaaag
gctcgaaagactggactgattactcccaaagcaggatttgactctgattatgaccaagct
cttgctgacataagagaaaatgaacagagcctcctggaatacttggagaaacagcgcagt
cgaattggctgtagaaccatagtttactggggaattggtaggaatcgttaccagttggaa
attccagagaatttcatcacccgtaatttgccagaagaatatgagttgaaatccaccaaa
aagggttgtaaacgatactggaccaagacaattgagaagaagttgggtaatctgataaat
gccgaagaacggagagacgcatcattaaaggactgcatgaggcgactgttctataacttt
gataaaaattataaggactggcaggctgctgtggagtgcactgcagtgttggatgtgtta
ttgtgcctgaccaactacagtcgaggaggtgatggtcctatgtgtcgtccaataattctg
ttgccagaagaagatactcctccctttctagaccttaaaggatcacgccatccctgcatt
acgaagactttttttggtgatgactttattcctaatgacattctaataggttgtgaggaa
gaggaggaggaaaatggcaaagcttattgtgtgcttgttactggaccaaatatgggaggc
aagtctacacttatgagacaggctggcctattagctgtaatggcccagatgggctgttac
gtaccagctgaagtgtgtaggctcacaccaattgatagagtgtttactagacttggtgcc
tcagacagaataatgtcaggtgaaagtacattttttgttgaattgagtgaaactgccagt
atacttagacatgcaacagcacattctctggtgcttgtggatgaattaggaagaggtacc
gcaacattcgatgggacagcaatagcaaacgcagttgtgaaagaacttgctgagaacata
aagtgtcgtacgttgttttctacccactaccattcattagttgaagattattctcaaaat
gttgcagtgcgcctaggacacatggcatgcatggtagaaaatgaatgtgaagaccccagc
caggagactattaccttcctctataaattcattaaaggagcctgtcctaaaagctatggt
tttaatgcagcaaggcttgctaatcttccagaggaggttattcaaaagggacatagaaaa
gcaagagaatttgagaagatgactcagtcactgcgattatttcgggaggtttgtttggcc
agtgaaaggtctactgtggatgctgatgctgtccataagttgctgactttgattgaggaa
ttatag
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