Bubalus bubalis (water buffalo): 102409943
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Entry
102409943 CDS
T05912
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102409943 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bbub03041
]
102409943 (PRPF40A)
Spliceosome [BR:
bbub03041
]
Complex A
U1 snRNP components
U1 related factors
102409943 (PRPF40A)
Complex B
102409943 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
102409943
NCBI-ProteinID:
XP_025117151
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All DBs
Position
2:95569604..95629283
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AA seq
975 aa
AA seq
DB search
MCSGSGRRRSSLSPTMRPGTGAERGGLMVSEMENHPPSRGLGDGERRLSGSSLCSSSWVS
ADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMS
SVMPGMMMSHMSQASMQPALPPGVNNMDVAAGTTSGAKSMWTEHKSPDGRTYYYNTETKQ
STWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQNTI
VAGSLITKSNLHAMIKAEESSKQEECTTTSAAPVPTTEIPTTMSTMAAAEAAAAVVAAAA
AAAAAAAAANASASTSASSTVSGTVPVVPEPEVTSIVATVVDNENTVTISTEEQAQLTST
PSVQDQSEVSSNTGEETSKQETVADFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKE
KRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKES
FQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQL
RKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIR
ALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRF
TNMLGQPVFSLGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAI
ISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIE
LDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHH
RKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSKKRRHK
SDSPESDAEREKDKKEKDREGEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGEL
EKRRRTLLEQLDDDQ
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgtgtagcggcagtggccgccggcggagcagtctgagcccgacgatgaggccggggacg
ggagccgagcgtggaggcctcatggtgagtgaaatggagaaccatcctccctcgcggggt
ctcggggacggggagcggagattgtccggctcaagcctctgctccagctcttgggtctct
gctgacggcttcctgaggagacggccctcgatggggcatcctggcatgcattatgcccca
atgggaatgcatcctatgggtcagagagcgaatatgcctcctgtacctcatggaatgatg
ccacaaatgatgcccccaatgggaggaccaccaatgggacaaatgcctggaatgatgtct
tcagtaatgcctggaatgatgatgtctcatatgtctcaggcttccatgcagcctgcctta
ccgccaggagtaaataatatggatgtagcagcaggtacaacttctggcgcaaaatcaatg
tggactgaacataaatcacctgatggaaggacctactactacaatactgaaacaaaacag
tctacttgggagaaaccagatgatcttaaaactcctgctgagcaacttttatctaaatgc
ccttggaaggagtacaagtctgactctggaaagccttattattacaattctcaaacaaaa
gaatctcgctgggccaaacctaaagaacttgaagaccttgaaggataccagaataccatt
gttgctggaagtcttattacaaaatcaaacctgcatgcaatgatcaaagctgaagaaagc
agtaaacaagaagagtgcaccacaacatcagcagccccagttcctacaacagaaattcca
accacaatgagcaccatggctgctgcagaagcagcagctgctgttgttgcagcagcagcc
gcagcagcagcagctgctgctgcagccaatgccagtgcttccacttctgcctctagtact
gtcagtggaactgttccagttgttcctgagcctgaggttacttcgattgttgctactgtt
gtagataatgaaaatacagtaacaatttctactgaagaacaagcacaacttactagtacc
ccttctgttcaggatcaaagtgaagtgtctagtaatactggagaagaaacatctaagcag
gaaactgtagctgattttactcccaaaaaagaagaggaagaaagccaaccagcaaaaaaa
acatatacttggaatacgaaagaggaggcaaagcaagcatttaaagaattattaaaagaa
aagcgtgtaccatctaatgcttcatgggagcaagctatgaaaatgatcattaatgatcca
cgatatagtgctttagcaaagttgagtgaaaaaaagcaggcctttaatgcttataaagtc
caaacagagaaagaagaaaaagaagaagcaagatccaaatacaaagaggctaaggaatcc
tttcagcgttttcttgagaatcatgagaaaatgacttccacaactagatacaaaaaagca
gagcaaatgtttggagagatggaagtctggaatgcaatatcagaacgtgatcgtcttgaa
atctatgaagatgttttattctttctttcaaaaaaagaaaaggagcaagcaaagcagttg
cgaaagaggaattgggaagccttaaaaaacatacttgacaacatggctaatgtgacatat
tctactacttggtctgaagcccagcagtatctgatggataatccaacttttgcagaagat
gaggaattacagaatatggataaagaagatgcattaatttgctttgaggaacacattcga
gctttagaaaaggaagaggaagaagaaaaacaaaagagtttgcttcgtgaaaggagacga
cagcgtaaaaatagagaatcttttcagatatttttagatgaactgcatgaacatggacaa
ctgcattctatgtcatcttggatggaattgtatccaacaattagttctgacattagattc
actaatatgcttggtcagccggttttttcattaggatcaactgcacttgaccttttcaag
ttttatgttgaggatcttaaagcacgttatcatgatgaaaaaaagataataaaagacatt
ctgaaggataaaggatttgtagttgaagtaaatactacttttgaagactttgtggcaata
atcagttcaactaaaagatcaaccacattagatgcaggaaatattaagctggctttcaat
agtttactagaaaaggcagaagcccgtgaacgtgaaagagaaaaagaggaggctcggaag
atgaaacgaaaagaatctgcatttaagagtatgttgaaacaagctactcctccaatagaa
ttggatgctgtctgggaagatatccgggagagatttgtaaaagagccagcatttgaggat
ataactctagaatctgaaagaaaacgaatatttaaagattttatgcatgtgcttgagcat
gaatgtcaacatcatcattcaaaaaacaagaagcattctaagaaatctaaaaaacatcac
aggaagcgctcccgctcccgatcagggtcagattcagatgatgatgacagccattcaaag
aaaaaaagacagcgatcagagtctcgttctgcttcagaacattcgtctagtgctgaatct
gagagaagttacaagaaatcaaaaaaacataagaagaaaagcaagaagagaagacataaa
tcagactctccagagtcagatgctgaaagagaaaaggataaaaaagaaaaagaccgggaa
ggcgaaaaagacagaactagacaaagatcagaatcaaaacacaaatcacctaagaaaaag
actggaaaggattctggtaattgggatacttctggcagtgaactgagtgaaggggaattg
gaaaagcgcagaaggacccttttggagcaactggatgatgatcaataa
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