Bubalus bubalis (water buffalo): 102410632
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Entry
102410632 CDS
T05912
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03008
Ribosome biogenesis in eukaryotes
bbub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
102410632 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
102410632 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbub03021
]
102410632 (XRN2)
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102410632 (XRN2)
03009 Ribosome biogenesis [BR:
bbub03009
]
102410632 (XRN2)
03016 Transfer RNA biogenesis [BR:
bbub03016
]
102410632 (XRN2)
Transcription machinery [BR:
bbub03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102410632 (XRN2)
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
102410632 (XRN2)
Ribosome biogenesis [BR:
bbub03009
]
Eukaryotic type
Pre-60S particles
RNases
102410632 (XRN2)
Transfer RNA biogenesis [BR:
bbub03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
102410632 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
102410632
NCBI-ProteinID:
XP_025119927
LinkDB
All DBs
Position
14:complement(43250429..43313239)
Genome browser
AA seq
916 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAEIEKQRVREEILAKGGYLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCGLCNQFGHDVKDCEGLPREKKGKHDELADSLPCAEGE
FIFIRLSVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGDSFRRRQKEKRKRMKRDQPSFSPGGILTPHALGSRSSPGSQVASN
PRQAAYEMRMQNNLSPSVSPNTSFTSDGSPSPRGGIKRKAEDSDSEPEPEDNVRLWEAGW
KQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFE
GIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAID
LNGKRYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLGGDVLFVGKHHPLHDFI
LELYKTGSTELVDVPPELCHGIQGKFSLDEEAVLPNQVVCSPIPVLKDLTHNAVISINFK
DPQFAEDYIFKAVMLPGARKPAPVLKPSDWEKSSNGRQWKPQLGFNRDRRPVHLDPAAFR
ALGHVMPRGSSGTGVYSNAAPPPPAAFQGNMYRPLLRGQAQIPKLMSNVRPQDSWRGPPP
LFQQQRFDRGVGAEPLLPWNRMLQTQNAAFQPNQYQMLAGPGGYPPRRDDRGGRQGYPRE
GRKYPLPPPSGRYSWN
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggccttcttccgctggctcagccgcaagtacccgtccatcattgtcaac
tgcgtggaagagaagccaaaagaatgcaatggtgtaaagattcctgtcgatgccagtaag
cctaaccccaatgatgtggagtttgataatctgtatttggatatgaatggaatcatccac
ccctgtacgcatcctgaagacaaaccagcaccaaaaaacgaggatgaaatgatggttgcg
atctttgagtacattgacagactcttcagtattgtcagaccaagacggcttctctacatg
gcaatagatggagtggcaccgcgtgctaaaatgaaccagcaacgttcaaggaggttccga
gcatccaaagaaggcatggaagcagagatagagaagcagcgagtcagggaagagatactg
gcgaaaggtggctatcttcctccagaagaaataaaagaaagatttgacagcaactgtatt
acaccaggaactgagttcatggacaatcttgctaaatgccttcgctattacatagctgat
cgtttaaataatgaccctgggtggaaaaatttgacagttattttatctgatgctagtgct
cctggtgaaggggaacataaaatcatggattacattagaagacaaagagcccagcctaac
catgacccaaacactcatcactgcttatgtggagcagatgctgatctcattatgcttggc
cttgctacacatgagcccaactttaccattatcagagaagaattcaaaccaaacaaaccc
aaaccctgtggtctttgtaatcaatttggacatgatgtcaaggactgtgaaggtttgcca
agagaaaagaagggaaagcacgatgaactggcagacagccttccttgtgcagaaggagag
tttatcttcattcgtctcagcgttctccgtgagtatttggaaagagagctcaccatggcc
agcctgccgttcacatttgatgtcgagaggagcattgatgactgggtcttcatgtgcttc
tttgtgggaaacgacttccttcctcacctgccatccttagagattagggaaggtgccatc
gaccgcttggttaacatatacaaaaatgtggtacacaaaaccggggacagttttagaaga
cgacagaaagaaaaaagaaagagaatgaagagagatcaaccatctttctctcctggtgga
atattaacccctcatgcccttggttcaagaagctcaccaggatctcaagtggccagtaat
ccaagacaagcggcttatgaaatgaggatgcagaataacttgagtccttcagtctctcct
aatacaagtttcacttctgacggctccccatctccgagaggaggaattaaacgaaaagcg
gaagacagtgacagtgaacctgagccagaggataacgtcaggttatgggaagctggttgg
aaacagcgatactacaagaacaaatttgatgttgatgcagcagatgagaaattcagacgt
aaagtcgttcagtcttacgttgaaggactctgctgggttctacgatattattaccagggc
tgtgcatcctggaagtggtattatccattccattatgcaccattcgcttcagactttgaa
gggattgcagacatgccttctgattttgagaagggtaccaaaccgtttaaaccactggaa
caacttatgggggtttttccagctgctagtggtaactttctacctccatcatggcggaag
ctcatgagtgatccagattctagtataattgacttctaccctgaagattttgctattgat
ttgaatgggaagaggtatgcatggcaaggtgtggccctgttgccatttgtggacgagcgg
agactgcgtgctgccctggaagaggtgtacccagacctcacccctgaagagaccagaaga
aacagtcttggaggcgacgtcttatttgttgggaaacatcacccactgcatgacttcatt
ttagagctgtacaagacaggttccacagagttagtggatgtaccacctgaactgtgtcat
gggatccaagggaagttttctttggatgaggaagctgttcttccaaatcaagtagtatgt
tctcctattcctgtgttaaaggatctgacacacaatgctgtgatcagtatcaattttaaa
gacccacagtttgctgaagattacatttttaaagctgtcatgcttccgggagcaagaaaa
cccgcaccggtcctgaaacctagtgactgggagaaatccagcaacggacggcagtggaag
ccccagcttggctttaaccgggaccggcggcctgtccacctggatcccgcagccttcagg
gctttgggccacgttatgccgagaggctcgtccggaactggcgtctacagcaatgctgca
ccaccaccgcctgcagctttccaggggaacatgtaccggccacttctgcgaggacaagcc
cagattccaaagctcatgtcaaatgtgaggccccaggactcctggcgaggtccccctccc
cttttccagcagcaaagattcgacagaggtgttggggccgaacctctgctaccatggaac
cggatgctccaaacccaaaatgcagccttccagccaaaccagtaccagatgctggctggg
ccaggcgggtatccacccagacgtgacgatcgtggagggagacagggatatcccagagaa
ggaaggaaataccctttgccaccaccctcaggaagatacagttggaattag
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