KEGG   Bubalus bubalis (water buffalo): 102410680
Entry
102410680         CDS       T05912                                 
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
  KO
K11367  chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
bbub  Bubalus bubalis (water buffalo)
Brite
KEGG Orthology (KO) [BR:bbub00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bbub03021]
    102410680 (CHD1)
   03036 Chromosome and associated proteins [BR:bbub03036]
    102410680 (CHD1)
Transcription machinery [BR:bbub03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     102410680 (CHD1)
Chromosome and associated proteins [BR:bbub03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    SAGA complex
     102410680 (CHD1)
    SLIK complex
     102410680 (CHD1)
SSDB
Motif
Pfam: SNF2-rel_dom HTH_CHD1_Hrp3 CDH1_2_SANT_HL1 CHD1-like_C Chromo Helicase_C DEAD
Other DBs
NCBI-GeneID: 102410680
NCBI-ProteinID: XP_025147978
LinkDB
Position
9:12486101..12559223
AA seq 1799 aa
MNGHSDEESVRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGS
QSESESDNSRDNKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQQQHQASSNSGS
EEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEERDKSSCDETESDY
EPKNKVKSRKPQNRSKSKNGKKIIGQKKRQIDSSEEEEDDEEEYDNDKRSSRRQATVNVS
YKEDEEMKTDSDDLLEVCGEDVPQPEEEEFETIERFMDCRIGRKGATGATTTIYAVEADG
DPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKR
WLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSEC
SWEDGALISKKFQACIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHEGLEL
RDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLST
LTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKA
FLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIM
PEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSAL
QKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQ
HLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGE
LRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI
GQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFN
KEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEAGPLTVGDELLSQFKV
ANFSNMDEDDIELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYMLPRMRNCAKQIS
FNGSEGRRSRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKF
GGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDNSSGTERTGGRLGKVKGPT
FRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYIIPCHTKAAHFDIDWGKEDDSNL
LIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLSRDLAKKE
AQRLSGAGGSKRRKARAKKNKAMKSIKVKEEIKSDSSPLPSDKSDEDDDKDEITSVKHPN
KKIKTERDSEEKTEPDVCIKKEPEEKREAKEKENKRELKREIKEKEDKKDIKEKDFKEKR
ENKVKEAIQKEKDIKEEKLSESKSESKERSKKSSVLDAPVHITASGEPVPIAEESEELDQ
KTFSICKERMRPVKAALKQLDRPERGLSEREQLEHTRQCLIKIGDHITECLKEYTNPEQI
KQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQNNDQNSSLNTQVIRNPDVERLK
ENTNHDDSSRDSYSSDRHLSQYHDHHKDRHQGDSYKKSDSRKRPYSSFSNGKDHRDWDHY
KQDSRYYSDREKHRKLDDHRSRDHRSNLEGSLKDRTHSDHRSHSDHRLHSDHRSSSEYTH
HKSSRDYRYHSDWQMDHRASSSGPRSPLDQRSPYGSRSPFEHSIEHKSTPEHTWSSRKT
NT seq 5400 nt   +upstreamnt  +downstreamnt
atgaatggacacagtgatgaagaaagtgttagaaacagtagtggagaatcaagccagtcg
gatgatgattctgggtcagcttccggctctggatctggttcgagttctggaagcagtagt
gatggaagcagtagccagtcaggtagcagcgactcagactctggatccgaatcgggcagt
cagtcagagtctgagtcagacaattcccgagacaataaagttcaagcaaaaccaccgaaa
gttgatggagctgagttctggaaatctagccctagtattttggccgttcagagatctgca
atgcttaagaagcagcagcagcagcagcagcaacatcaagcttcatctaatagtggatca
gaggaggattcctctagcagtgaagattccgatgactcatccagtgaggtcaaaaggaaa
aagcataaagatgaagattggcagatgtctggatcgggatcgccctctcagtctggttcg
gattcagaatctgaagaagaaagagataaaagcagttgtgatgaaacagaatcagattat
gagccaaaaaataaagttaaaagtagaaaacctcaaaatagatctaagtcaaaaaatgga
aaaaagattattggacaaaaaaagagacagattgattcatctgaggaggaggaggatgat
gaagaagaatatgataatgataaaagaagctctcgtcgccaagcaactgtcaatgttagc
tataaggaagatgaggaaatgaaaacagattctgatgacctcctggaagtctgtggagag
gatgttcctcaacctgaggaagaggaatttgaaacaatagaacggtttatggattgtcgg
attggaagaaaaggagctactggtgctactacaaccatctatgcagttgaagcagatggt
gacccgaatgcaggatttgaaaaaaacaaggaaccaggagagatccagtatttaattaaa
tggaaaggatggtcacatatccataatacttgggagacagaggaaacccttaagcagcaa
aatgttagaggaatgaaaaaattagataattataagaaaaaagatcaggaaacaaaaaga
tggttgaaaaatgcttctccagaagatgtggaatattataattgtcagcaagaacttaca
gatgatctccataagcagtatcaaatagtggagcgaataattgctcactccaatcagaag
tcagctgctggctatcctgattattattgcaaatggcagggtcttccatactcagaatgc
agctgggaagatggcgctcttatttccaaaaagtttcaagcatgcatagatgagtatttc
agcaggaatcaatcaaaaaccactccttttaaagactgcaaagtattaaaacaaaggcca
agatttgtagccctaaagaaacagccatcctatattggaggacatgaaggattagaatta
agagattatcaactgaatggtttaaattggcttgctcactcttggtgcaaaggtaatagt
tgcatacttgctgatgaaatgggccttggaaaaacaatacagacgatctcatttctgaac
tatttgtttcatgaacaccaattatatggaccttttctgttagtagtaccactctccact
ctcacttcctggcaaagggagattcagacatgggcttctcaaatgaacgctgtggtttat
ttaggtgacatcaacagcagaaacatgataagaactcatgaatggatgcatccccagacc
aaacggttaaaatttaatatactgttaacaacttatgaaatcttgttgaaggataaggca
ttccttggaggtctgaattgggcatttataggtgtggacgaagcacatcgattaaagaat
gatgactctcttctgtataaaactttaatagattttaagtccaatcaccgtctccttatc
actggaactcctctgcaaaactccctgaaagagctctggtctttgctgcatttcattatg
ccagaaaagttttcttcctgggaagattttgaagaagaacatggcaaaggcagagaatat
ggttatgcaagcctccacaaggagcttgagccgtttctattgcggagggttaagaaagat
gtggaaaaatctcttcctgccaaggttgaacagattttaagaatggaaatgagtgcttta
cagaaacaatattacaagtggatattaactaggaattacaaagccctcagcaaaggttcc
aagggcagtacctcaggctttttgaatattatgatggagctaaagaaatgttgtaaccat
tgctacctcattaaaccaccagataataatgaattctataataaacaggaggccttacaa
cacttaatccgtagtagcggaaaactaattcttcttgacaaactgttaattcgcctaaga
gagcgaggcaatagagttcttattttttctcaaatggtgcggatgttagatatacttgca
gaatatttgaagtatcgtcagtttccctttcaaagattagatggatcaatcaaaggggag
ctgaggaaacaagctctagatcattttaatgctgaaggatcagaggatttctgctttttg
ctttccacaagagctggaggtttaggaattaacttagcctcagctgacactgttgttata
tttgattctgattggaatccacaaaatgatcttcaggcacaggctagagctcatcgaatt
gggcaaaagaaacaggtgaatatttatcgtctggttacaaagggatcagttgaagaggat
attcttgaaagggccaaaaagaagatggttttagatcatcttgtgattcaaagaatggac
acaactgggaagacagtactacacacaggttctgccccttcaagttctactcctttcaat
aaagaagaattatcagccattttaaagtttggtgctgaggaactttttaaggagcctgaa
ggagaagaacaagagccccaggaaatggatatagatgaaatcttgaagagggctgaaact
catgaaaatgaagccggacctttaactgtaggagatgaattactttctcagttcaaggtg
gccaacttttcaaatatggatgaggatgatattgagttggagcctgaaagaaattcaaag
aactgggaagaaatcattcctgaagatcaaagacgacgattagaagaagaggaaagacaa
aaggaacttgaagaaatttatatgctccccagaatgagaaactgtgcaaaacagattagt
ttcaatggaagtgaagggaggcgcagtagaagtaggagatactctggatctgatagtgat
tcaatatcagaaagaaaaaggccaaagaaacgtggaagaccacgaactatccctcgggaa
aatattaaaggatttagtgatgcagaaattcggcggtttatcaagagttacaagaaattt
ggtggccctctggaaagattagatgcaattgctcgagatgctgaattagttgataagtca
gagacagacctcagacgactaggagaattggtgcataatggttgcattaaagctttaaag
gacaactcttcaggaacagaacgaacaggtggtagacttggaaaagtaaagggcccaaca
ttccgaatatcaggtgtacaggtgaatgccaagctggtcatctcccatgaagaagaatta
ataccgctgcacaaatccattccttcagatccagaagaaagaaagcagtatatcatccca
tgccacacgaaggcagctcattttgatatagactggggcaaagaagatgattccaatttg
ttaattggtatctacgaatatggatatggaagctgggaaatgattaaaatggatcctgac
ctcagtctgacacacaagattcttccagatgatcctgataaaaaaccacaagcaaaacaa
ttacagacacgtgcagactacctcatcaaattacttagtagagatcttgcaaaaaaagaa
gctcagaggctttctggtgcaggaggttcaaaaaggcgaaaagcaagagctaagaagaat
aaagcaatgaagtctataaaagtgaaagaggaaataaagagtgattcttctcccttgccc
tcagacaagtctgatgaagatgatgataaggatgaaatcacttctgtgaaacatccaaac
aaaaaaattaaaacagaaagagacagtgaagaaaaaactgagccagatgtttgtataaag
aaggaaccagaagaaaagagggaagcaaaagaaaaggaaaataaaagagaacttaaaagg
gagataaaagaaaaagaggataagaaagatataaaggaaaaagattttaaagagaaaaga
gaaaacaaagtaaaagaagctatacagaaagaaaaagacataaaagaagaaaagctgagt
gaatccaagtctgaaagcaaggaaagatctaagaaatcttcagtgttggatgctccagtt
cacatcaccgcaagtggtgaaccagtgcccatagcagaagaatctgaagagctggatcag
aagacattcagcatttgtaaagagaggatgaggcctgtcaaagcagcattgaagcagctt
gataggcctgagagaggcctttcggaaagagaacaactggaacatactagacagtgcttg
ataaaaatcggagaccatatcacagaatgtctgaaagagtatacaaatcctgaacaaatc
aagcagtggagaaaaaacctgtggatttttgtatctaagtttactgagttcgatgcaaga
aaattacataaattatataagcatgctattaaaaaacggcaggaatcccaacagaataat
gaccagaacagcagcttgaatacacaagtgattagaaatccagatgtagaaagattaaaa
gagaatacaaatcatgatgacagcagcagggacagttattcgtctgatagacacttatct
caatatcatgatcatcataaagaccgacatcagggagattcgtacaagaaaagtgactct
aggaagagaccttattcttcttttagtaatggtaaagatcatcgtgattgggatcactac
aagcaagacagcagatattacagtgatagagagaaacacagaaaactggatgatcacagg
agtagagaccacagatcaaatctggaaggaagtttaaaagacagaactcattctgatcat
cgttctcattcagatcatcggttacattcagaccatcgatcaagttctgaatatacacac
cataaatcttccagggattataggtatcactcagattggcagatggaccatagagcttcc
agtagtggtcccagatctccactagaccagaggtctccttatggctccagatctccattt
gaacactcaattgaacacaaaagtacacctgagcatacctggagtagtcggaaaacataa

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