Bubalus bubalis (water buffalo): 102411464
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Entry
102411464 CDS
T05912
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X3
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102411464 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102411464 (PNLDC1)
Enzymes [BR:
bbub01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
102411464 (PNLDC1)
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
102411464 (PNLDC1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
102411464
NCBI-ProteinID:
XP_044779962
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Position
10:complement(8023607..8049421)
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AA seq
551 aa
AA seq
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MKHLWAGRWPCRLLRGRDWWARAGAVRFFTPPPALREPFKAPARRLRESARRRVAALTGR
SPPSCCVAMDIGADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNLSGPQQISLFDLPSE
WYLKTRQSVQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPTTFGVLDSEFSFQASSV
QFLNQYGFDYNKFLKNGIPYMNEEQEKKIKHNILTGNWKVRSSLDKDQIKVVIDEVTRWL
DLAEEGDWMTLPGIAGFQAFEVQLVLRKALPDIWTVLRDQGPLVGHNMMMDLLHLHEKFF
RPLPESYDEFKLNIHNLFPVLIDTKNVTKDIWKELNFPRVSNLSEVYEVLSSDLNPTKNS
GPVIIHASRCEKYVETKYPHEAAYDAFLCGSVLLKVAHLLLWKVHSAVPIPEPSFPLYLD
VLVPYVNQVNLIRAGVPKINFAGPDSPGIRPPILILTVRKWPGVSEQQVYCEFQNLCKFD
VRRLTRSQFLLMTNKFKDTRSILKEYKGHPTLQISLYRYWRHSPNINCLLQVCGVITSWA
FIAFLLGGAGP
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgaaacacctgtgggcaggcagatggccctgccgcctgctgcgcggccgggactggtgg
gcgcgcgcgggggctgtgcgtttcttcactcccccacccgctctccgcgagccctttaag
gcgccggcgcggcgcttgcgtgaaagtgcgaggcgacgcgtggccgcactcactgggcgc
agtccgccgagctgctgcgtggccatggacataggcgccgatgagtttgagcagagcctc
cctctgctgcaggagctcgtcctgggtgcggacttcgtgggtctggacatagagttcacg
ggccttcgttctaacctgtctgggccccagcagatcagtctgtttgacttgccatcagag
tggtatctaaagacccgtcagagtgttcagcagttcaccatctgtcagatcggattgtct
gtgttctccagtattgaaggcgagtcgaacaagtatgtagctcattcatgtaacttcttc
ctcttccctacgacatttggggttttggactcagagttctctttccaggcttccagtgtt
cagtttttgaaccagtatggcttcgactataacaagtttctcaaaaatgggatcccctat
atgaacgaagaacaggagaagaaaattaagcacaacatcctgactgggaactggaaagtt
cgcagctctctggacaaagaccagatcaaggtggtgattgacgaggtgacgcgctggctg
gacctggcggaggaaggggactggatgaccctccctggtattgctggcttccaggccttc
gaggtccagctcgtactgaggaaggccctccctgacatctggacggtgctgagagaccaa
gggcccttagtgggacataacatgatgatggatctgctgcatctccatgagaagttcttc
agacctctcccagaaagctacgatgaatttaagctgaatatccacaacctatttcctgtt
ctcattgacaccaagaatgtgacaaaggatatctggaaggaactcaatttcccaagggtt
tcaaatctttcagaagtttatgaagtcctgagcagtgacttgaatcccaccaagaactcc
gggccggtgatcattcacgccagcaggtgtgagaagtacgtggagaccaagtacccccat
gaagcagcatacgacgccttcctgtgcgggtcagttctgttgaaagtggcgcacctgctc
ctgtggaaggtacacagcgctgttcccatccccgagcccagcttcccgctctacctggac
gtgctggtgccctacgtgaaccaggtgaatcttatccgagccggggtccccaaaatcaac
tttgcgggcccagactcccctggcatccgcccccccatcctcatcctcaccgtcaggaag
tggcctggggtcagcgagcagcaggtctactgcgagtttcagaacctctgcaaattcgac
gtcagaaggctcacacggagccagttcctgctcatgaccaataagttcaaggacacacgg
agcatcctgaaggagtacaagggccacccgacgctgcagatctccctgtaccgctactgg
agacactccccgaacatcaactgcctgctacaagtgtgcggcgtcattacctcctgggcc
ttcatcgcgtttctcctgggaggagctggcccgtga
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