Bubalus bubalis (water buffalo): 102411612
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Entry
102411612 CDS
T05912
Symbol
LSM4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03018
RNA degradation
bbub03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102411612 (LSM4)
09123 Folding, sorting and degradation
03018 RNA degradation
102411612 (LSM4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102411612 (LSM4)
03041 Spliceosome [BR:
bbub03041
]
102411612 (LSM4)
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102411612 (LSM4)
mRNA degradation factors
5'-3' decay
Lsm complex
102411612 (LSM4)
Spliceosome [BR:
bbub03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
102411612 (LSM4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
102411612
NCBI-ProteinID:
XP_006058017
LinkDB
All DBs
Position
9:complement(105442548..105454854)
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AA seq
139 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGI
PGTGRGQPEKKPGRQAGKQ
NT seq
420 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccttgtcgctgctgaaaacggctcagaatcacccaatgttggtggagctcaaa
aacggggagacatacaacgggcacctggtgagctgtgacaactggatgaacatcaacctg
cgcgaggtgatctgcacgtccagggacggggacaaattctggcggatgcccgagtgctac
atccgaggcagcaccatcaagtacctgcgcatccccgacgagatcatcgacatggtcaag
gaggaggtggtggccaagggccgtggccgcggtggcctgcagcagcagaagcagcagaag
ggccgcgggatggggggcgccgggcgaggtgtgttcggtggccggggccgaggtgggatc
cccgggactggcagaggtcagccagaaaagaagccaggcaggcaggcgggcaagcagtga
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