KEGG   Bubalus bubalis (water buffalo): 102412174
Entry
102412174         CDS       T05912                                 
Symbol
WDR33
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33 isoform X1
  KO
K15542  polyadenylation factor subunit 2
Organism
bbub  Bubalus bubalis (water buffalo)
Pathway
bbub03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:bbub00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    102412174 (WDR33)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bbub03019]
    102412174 (WDR33)
Messenger RNA biogenesis [BR:bbub03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     102412174 (WDR33)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 WD40_Gbeta WDR55 EIF3I Beta-prop_IFT140_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_Aladin Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_EIPR1 Collagen WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_Vps41 Beta-prop_IFT122_1st eIF2A WD40_RFWD3 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_WDR35_TULP_N Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_WDR11_2nd Beta-prop_WDR41 Ge1_WD40 PEP5_VPS11_N
Other DBs
NCBI-GeneID: 102412174
NCBI-ProteinID: XP_006061617
LinkDB
Position
2:56842851..56952747
AA seq 1336 aa
MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKC
PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKLNLNG
NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWH
VGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGVEYDDLEPNSLAVIPGMGIPEQLKLAMEQEQMGKDESNEIEMTIPGLDWGMEE
VMQKDQKKVPQKKVPYAKPIPAQFQQAWMQNKVPIPAPNEVLNDRKEDIKLEEKKKTQAE
IEQEMATLQYTNPQLLEQLKIERLAQKQAEQIQPPPSSGTPLLGPQPFPGQGPMSQIPQG
FQQPHPSQQLSMNMAQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQG
PPQGLPRPQDMHGPQGIQRHPGPHGPLGPQGPPGPQGNAGPQGHMGPQGPPGPQGHIGPQ
GPPGPQGHLGPQGPPGTQGMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGPLMGLN
PRGMQGPPGPRENQGPAPQGMMLGHPPQEMRGPHPPSGLLGHGPQEMRGPQEMRGMQGPP
PQGSMLGPPQELRGPPGSQGQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPI
PFQQQKTALLGDGPRAPFNQEGQNAGPPPLIPGLGQQGAQGRIPPLNPGQGPGPNKGDSR
GPPNHHMGPMSERRHEQSSGPEHGPERGPFRGSQDCRGPPDRRGPHPEFPDDFSRPDDFH
PDKRFGHRLREFEGRGGPLPQEEKWRRGGPGPPFPPDHREFSEGDARGAARGPPGAWEGR
RPGDDRFPRDPEDPRFRGRREESFRRGAPPRHEGRAPPRGRDGFPGPEDFGPEENFDASD
ETARGRDLRGRGRGTPRGGRKGLLPTPDEFPRFEGGRKPDSWDGNREPGPGHEHFRDAPR
PDHPPHDGHSPASRERSSSLQGMDMASLPPRKRPWHDGPGTSEHREMDAPGGPSEDRGGK
GRGGPGPSQRVPKSGRSSSLDGDHHDGYHRDEPFGGPPGSGTPSRGGRSGSNWGRGSNMN
SGPPRRGASRGGGRGR
NT seq 4011 nt   +upstreamnt  +downstreamnt
atggctacagaaattggttctcctcctcggtttttccatatgccaaggttccaacaccag
gcacctcgacaactgttttataagcgaccagattttgcacagcagcaagcaatgcagcag
cttacctttgatggaaaacgaatgagaaaagcagtaaaccgaaaaaccatagactataat
ccatctgtaattaagtatttggagaatagaatatggcaaagagaccagagagatatgcga
gcaattcagcctgatgcaggttattataatgatctggttccacctattgggatgttgaat
aatcctatgaatgcagtaacaacaaagtttgttcgaacatcaacaaataaagtaaagtgt
ccagtatttgttgtcaggtggactccagaaggaagaaggttggtcactggagcttctagt
ggggagttcaccttgtggaatggactcactttcaattttgaaacaatattacaggctcat
gatagcccagtgagagccatgacttggtcacataatgacatgtggatgttgacagcagac
cacggaggatatgtgaaatattggcagtcgaacatgaacaacgtcaagatgttccaggca
cataaggaggcgattagagaggccagtttctcacccacggataataaatttgctacatgc
tctgatgacggcactgttagaatctgggactttcttcgttgccatgaggaaagaattctc
cgagggcacggtgctgatgtgaagtgtgtagactggcatccaacgaaagggttagttgtt
tcaggaagtaaagatagtcaacagccaatcaagttctgggatcccaagactgggcagagt
cttgcaacacttcatgcccataaaaacacagtaatggaagtgaaattaaatctcaatggc
aactggctactcacagcatcacgtgaccacctctgtaaacttttcgacatccgaaatctg
aaagaagagcttcaagtcttccgaggtcataagaaagaagctacagctgtggcctggcat
cctgttcatgaaggactttttgccagtggagggtctgatggctctttgttattttggcat
gttggagtagagaaagaagtgggtggaatggagatggcccatgaaggaatgatctggagt
ctggcttggcatccccttggacatattctctgctcaggctcaaatgaccatactagcaaa
ttttggacccgaaaccgaccaggtgataaaatgcgagatcgatacaacctcaacctatta
cctggaatgtctgaagatggagtggaatatgatgaccttgaacctaatagtctggcagta
attccagggatgggaataccagaacaactaaaattagctatggaacaagaacagatgggg
aaagatgaatcaaatgaaattgaaatgacaattccaggtttagattggggaatggaggag
gtaatgcagaaggatcagaaaaaagtgcctcagaagaaggttccgtatgcaaaacctatc
cctgctcagttccagcaggcatggatgcaaaataaagttccaattcctgccccaaacgag
gtattgaatgacagaaaagaagacattaaattggaagagaagaaaaaaacacaagcagaa
atcgaacaagagatggccacattacagtatactaacccacaacttctggagcaacttaaa
attgaaagacttgcacagaaacaggctgagcagattcagcctcctccttcatctggcacc
cctctcctgggaccccagccctttccaggacaaggtccaatgtctcagattcctcaaggt
tttcaacagcctcatccatctcagcagctgtcaatgaacatggctcaaatggggcctcca
ggtccacagggacagtttagaccccctggaccacagggacaaatgggaccacaaggccct
ccactgcatcagggaggtggggggccgcaaggattcatgggaccacaagggccccaggga
ccgccccaggggttgccaaggcctcaggacatgcatgggccccagggaatacaaaggcat
cctggacctcatggccctctgggacctcaaggaccacctggaccccagggtaatgctggt
cctcagggtcatatgggtcctcagggcccacctggcccacaaggtcacataggcccccaa
ggcccacctggtccccagggtcacttgggccctcagggacctcctggtactcaaggtatg
cagggaccacctggtcccagaggaatgcaaggacctccccatcctcacgggatacaaggc
gggccagggtctcaagggatccaaggtcctgtgtctcagggacctctgatgggattgaat
ccaagaggaatgcagggtcctccaggcccccgagagaaccagggtcctgctccccaaggg
atgatgctgggtcacccacctcaagagatgagaggacctcatcctccaagtggactgctg
ggacatggccctcaggagatgcgaggtcctcaggagatgcgaggaatgcagggccctcca
ccccaaggatcgatgctgggccctccccaggaattgagggggcctccaggctcacaaggt
cagcaggggccgccccagggctctttgggacctccaccccagggtggcatgcaagggccc
cctggacctcagggacagcagaacccggcaagagggccacatccatctcaagggccaata
ccattccagcagcagaaaacagctctgctaggtgatgggccccgggcccccttcaaccag
gaaggacagaatgcaggccccccacccctgataccaggactagggcagcagggagcacaa
ggtcgcatcccccctcttaaccctggacaaggacctggccctaacaaaggtgactcgcgc
ggccctccaaaccatcacatgggcccaatgtcagagaggcggcacgagcagagcagcggc
cctgagcacggtcccgagagggggcctttccggggcagccaggactgcaggggtccccct
gataggcgcggccctcaccccgaattccctgatgacttcagcagaccagacgacttccac
cccgacaagcgctttggccaccggttacgagaatttgaggggcgaggaggccctttacca
caagaagagaagtggaggcgtgggggccctgggcctccgttcccccctgaccacagggag
ttcagtgagggggatgcccggggtgcagcccggggccccccaggggcgtgggaaggccgc
agacctggagacgaccgcttcccccgggaccctgaggacccgcggttccgagggcgcaga
gaagaaagcttcagaagaggagcacccccaagacatgagggccgtgctccccccagagga
agagatggctttcctgggcccgaagactttggaccagaggagaattttgatgcttctgac
gaaacagcccgaggaagagatctcagaggtcgaggtcggggtaccccccgaggaggaagg
aagggcttgcttcccactcctgatgagttccctcgctttgaaggaggacggaaaccagac
tcctgggatggaaatagagagccagggccaggacatgaacatttccgtgatgctccccgc
cctgatcatccccctcacgacggtcattccccagctagcagagaacggtcctcttctctc
caaggcatggacatggcatctttaccaccccgaaagcgcccctggcatgatgggccagga
acctctgagcacagagaaatggatgccccaggaggtccttctgaggatcgaggaggcaaa
ggccgagggggcccaggaccttctcagagagtgcctaagtccggacgttccagctccttg
gatggagaccaccatgatggataccacagagatgaaccttttgggggccctccaggcagt
ggtaccccttctagagggggccggagtggcagtaactggggtagagggagtaacatgaac
tctggcccaccaaggcgaggagcttcgagggggggtgggaggggtcggtag

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