Bubalus bubalis (water buffalo): 102412305
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Entry
102412305 CDS
T05912
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102412305 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102412305 (XAB2)
03041 Spliceosome [BR:
bbub03041
]
102412305 (XAB2)
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
102412305 (XAB2)
Spliceosome [BR:
bbub03041
]
Complex B
Other components
Prp19-related factors
102412305 (XAB2)
Complex C
102412305 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
ARM_TT21
TPR_15
ARM_TT21_C
TPR_1
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
102412305
NCBI-ProteinID:
XP_025149207
LinkDB
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Position
9:94702677..94711555
Genome browser
AA seq
855 aa
AA seq
DB search
MVVMARLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRSIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGSFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPSRAQSKILFVRSDASREELAELAQQANPEEIELGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcggctttcgaggcccgagcgaccggaccttgtgttcgaggaagag
gacctcccctatgaggaggaaatcatgcggaaccagttctctgtcaagtgctggctccgc
tacatcgagttcaagcagggggcccccaagcccaggctcaatcaactgtatgagcgggcg
ctcaagctgctgccctgcagctacaaactctggtaccgctacctgaaggcccgccgggcg
caggtgaagcatcgctgcgtgaccgaccccgcctatgaagatgtcaacaattgccacgag
agggcctttgtgttcatgcacaagatgccccggctgtggctggattactgccagttccta
atggaccagggacgtgttacgcacacacgccgaactttcgaccgggccctccgggcattg
cccatcacccagcactctcgtatttggcccctgtacctgcgcttcctgcgctcacacccc
ctgcctgagactgctgtgcggggctaccggcgcttcctcaagctgagccctgaaagcgct
gaggagtatatcgagtacctcaagtcaagcgaccggctggatgaggcggcgcagcgcctg
gccaccgtggtgaacgacgaacgcttcgtgtcgaaggccggcaagtctaactaccagctg
tggcacgagctctgtgacctcatctcccagaaccctgacaaggtgcagtctctcaacgtg
gacgccatcatccgcgggggcctcacccgcttcaccgaccagctgggcaagctctggtgc
tcgctggccgactactacatccgtagcggtcacttcgagaaggctcgggacgtgtatgag
gaggccatccggactgtgatgaccgtgcgggacttcacccaggtgtttgacagctatgcc
caattcgaggagagtatgattgcggcgaagatggagactgcctcggagctggggcgggag
gaggaggatgacgtagacctggagctacgtctggcccgcttcgaacagctcatcagccgg
cggcccctgctcctcaacagcgtcctgctgcgccagaacccgcaccacgtgcacgagtgg
cataagcgtgtggccctgcaccagggccgcccccgtgagatcatcaatacgtacacggag
gctgtgcagacggtggaccccttcaaggccaccggcaagccccacacgctgtgggtcgcg
ttcgccaagttttacgaggacaacgggcagctggacgatgcccgcgtcatcttggagaag
gccaccaaggtgagtttcaagcaggtggacgacctggccagtgtgtggtgtgagtgtgga
gagctggagctccggcatgagaactacgaccaggccttgcgacttctgcggaaggcgaca
gcgctgcctgcccggcgcgctgagtactttgatggctcagagcctgtgcagaaccgtgtg
tacaagtctctgaaggtgtggtccatgctggccgacctggaggagagcctcggcaccttc
cagtccaccaaagcagtgtacgaccgcatcctggacctgcgcatcgccacgccgcagatt
gtcattaactacgccatgttcctggaggagcacaagtactttgaggagagcttcaaggca
tacgagcgtggcatctcgttgttcaagtggcccaacgtgtcggacatctggagtacctac
ctgacgaagttcattgcccgctacgggggccgcaagctggagcgggcacgcgacctcttt
gagcaggcgctggatggctgccctcccaaatatgccaagacgctgtacctgctgtacgcg
cagctggaagaagagtggggcctggcgcggcatgccatggcagtgtatgagcgtgccacc
agggctgtggagcctgcgcagcagtacgacatgttcaacatctacatcaagcgggcggct
gagatctacggggtcacccacacccgcagcatctatcagaaggccattgaggtgctgtct
gacgagcatgcccgggagatgtgcctgcggtttgctgacatggagtgcaagcttggggag
atcgaccgtgcccgggccatatacagcttctgctcgcagatctgcgacccccggacgacc
gggtccttctggcaaacgtggaaggacttcgaggtccggcatggcaacgaggacaccatc
cgggagatgctgcggatccgccgcagcgtgcaggccacatacaacacgcaggtcaacttc
atggcctcgcagatgctcaaggtgtcgggcagcgccacgggcaccgtgtccgacctggcc
cccgggcagagcggtatggatgacatgaagctgctggagcagcgtgctgagcagttggcg
gcggaggctgagcgggaccagccctcaagggcccagagcaagatcctgtttgtgaggagt
gacgcctcccgggaagagctggctgagctggcccagcaggccaacccggaggagattgag
ctgggcgaggacgaggatgaggatgaaatggacctggagcccaacgaggtgcgcctggaa
cagcagagcgtgccagccgctgtgttcgggagcctgaaggaagactga
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