Bubalus bubalis (water buffalo): 102412592
Help
Entry
102412592 CDS
T05912
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X2
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
102412592 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bbub04131
]
102412592 (VPS8)
Membrane trafficking [BR:
bbub04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
102412592 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_VPS8_2
Beta-prop_WDR36-Utp21_1st
TPR_Vps41
zf-RING_Vps41
WD40_CDC20-Fz
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_2
Beta-prop_WDR3_1st
zf-C3H2C3
zf-RING_UBOX
zf-RING_5
Beta-prop_WDR5
zf-C3HC4
EIF3I
PHD
Motif
Other DBs
NCBI-GeneID:
102412592
NCBI-ProteinID:
XP_025142979
LinkDB
All DBs
Position
1:complement(127516479..127819006)
Genome browser
AA seq
1426 aa
AA seq
DB search
MENEPDHENVEQSLCAKTTDEELNKSFSLEASLSKFSYIDLDKELEFRNDLIDDKEFDIP
QVDTPPTLESILNETDDEDESFVLEDPTLLNIDTVDSHSYDTSSVASSDSGDRTNLKRKK
KLPDSFSLHGSVMRHSLLKGISAQIVSAADKVDAGLPTAIAVSSLIAVGTSHGLALIFDQ
NQALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHP
PGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEPLH
SKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVH
NYVNPMLAFCRGDVVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTIVLLDSVE
KLHVIDRQTQEELETVEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSYGG
QIFYLGTKSVYVMMLRSWRERVDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDASKRK
AIVADRMVEILLHYADRALKKCPDQGKIQVMEQHFQDMVPIIVDYCLLLQRKDLLFSQVY
DKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLIVHFQDKKLMENVEALIVHMDIT
SLDIQQIVLMCWENRLYDAMIYVYNRGMNEFISPMEKLFRVIAPPLNAGKTLTDEQVVMG
NKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSTEAPPEEEIYPYIRTLLH
FDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQL
AKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIRMAEK
AEFYQICEFMYEQEHQYDKIIDCYLRDPLREEEVFNYIHNILSIPGYSVEEKQSVWQKAM
DHIEELVALKPCKAAELVATHFSEQIETVIKKLQNQVLLFKFLRSLLDPREGIHVNQESL
QISPCIIEQFIELLCQFSPNHVIETLQVLECYRLEETIQITQKYQLCEVTAYLLEKKGDI
HGAFLIMLKRLQSKLQEIIRQDKNTKEDPSLKDVEETMVETIALCQRNSHNLNQQQREAL
WFPLLEAMMAPQKLSSSASPHPHSEALKSLTMQVLNSMAAFIALPSILQRILQDPVYGKG
KLGEIQGLILGMLDTFNYEQTLLETTTSLLNQDLHWSLCNLRASVTRGLNPKQDYCSICL
QQYKRRQEMADEIIVFSCGHLYHSFCLQSKECTIEIEGQTRWTCYKCSSSNKAGKLSENS
SEVKKGRITPSQVKMSPSCHLSKGDPAIKKATSEPVLDPQQTQAFDQLCHLYRGSSRLAL
LTELSQNRSGESCRPFGGSQSGPAFNSIFQKENFQLQLIPPPVTED
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatgaaccagaccatgaaaatgtggaacaaagcctctgtgccaagactactgat
gaggaactgaacaagtctttcagtctagaagcttcactttcaaaattctcttatatagat
ctggacaaggaactggagttcagaaatgatctgattgatgataaggagttcgatattcct
caggttgatactcctccaacactggaaagcatactaaatgaaactgatgatgaagatgaa
tcttttgttcttgaagatcctacattgttaaacattgatactgttgattctcactcttat
gatacttcatctgtggcaagctcagatagtggtgacaggaccaacttaaaaagaaagaag
aaattacctgattctttttcactccatggatcagttatgcgacattcacttttgaaggga
atttctgcccagatagtgtctgcagctgacaaagtagatgctggcttgcctacagcaatt
gcagtatccagtttgatagcagtgggtacatctcatggattggccttaatatttgatcag
aatcaagctttgcgactctgcttgggtagcactagtgttggaggtcagtatggagctatc
tctgccctcagtatcaacaatgactgctcaagacttctctgtggctttgctaagggacag
atcactatgtgggatttggccagtggaaagcttctaagatcaataacagatgctcatcct
ccgggaacagcaatattacatattaagtttacagatgatccaactcttgcaatttgcaac
gacagcggaggctctgtttttgaattgacatttaagagagtgatgggagtgagaacttgt
gaatctcgatgcctgtttagtggttccaagggtgaagtttgctgtattgaacctctccac
tctaagcccgagttgaaagatcatcccatcacacagttttccttattggccatggcatcc
ttaacaaagatactggtcattggattgaagccatccttgaaagtgtggatgacttttcct
tatggacggatggatccttccagtgttccactgctggcctggcatttcgtggcagtgcat
aattacgtgaatcccatgctagccttctgcagaggagatgttgttcattttctcctggtt
aagagagacgaatctggagcgatacatgttactaagcaaaagcatcttcacctatactat
gaccttatcaactttacttggataaactcacgcacaattgtgctcttggacagtgtagag
aagttgcatgtgattgatcggcaaactcaggaggaactggaaacggtggagatctcagaa
gttcagttggtctataatagcagccatttcaaatcactagccactggaggaaacgtgagc
caggcactggctttggttggagagaaggcttgctatcaatccataagtagctatggtggt
cagatcttttatttgggaacaaaatctgtttatgtgatgatgctgaggagctggagggag
agagtggatcacctcttgaaacaagactgtcttacagaagctttggctctggcatggtct
ttccatgaaggaaaagcaaaagcagtagtaggattatcaggggatgccagtaagcgaaag
gctattgttgcagatcggatggtagaaatcctattgcattatgcagaccgagctctaaaa
aaatgcccagaccagggaaaaatccaagtgatggagcaacattttcaggatatggtaccc
atcatagttgattactgccttctgctacagcgaaaggatcttttatttagccaggtgtat
gacaaattaagtgagaattcagtggccaaaggagtgtttctggagtgccttgaaccatat
attttaagtgataaattggtggggatcacaccccaggtaatgaaagacttgattgttcat
ttccaagataaaaagttaatggaaaatgtggaagccctcattgtgcatatggatatcacc
agcctagatattcagcagatagttctcatgtgttgggaaaatcgactatatgatgctatg
atctatgtctacaacagaggcatgaatgaatttattagtccaatggagaaacttttcaga
gtcattgcacctcctttgaatgcaggaaagacgctaacagatgagcaagttgttatgggc
aacaagcttcttgtatatattagctgttgtctagcaggtcgtgcctatccgcttggtgac
atccctgaagatcttgttcccttggttaaaaaccaggtttttgaatttctaattcgcctg
cattcaacagaagctccccctgaagaagaaatctatccctatattcggactttgctgcat
ttcgacacacgagaatttctgaatgtattggcgctgacttttgaagattttaaaaatgat
aagcaagctgtagaatatcaacaacgtattgtggatattttgttgaaggttatggtggag
aattcagattttacgccctcacaagtagggtgtctctttaccttccttgcccggcagctt
gcgaagcctgacaacaccttatttgtaaacagaactctttttgatcaggtccttgaattc
ctttgtagtcctgatgatgactcccgacactctgaaagacagcaggtccttttagaattg
ctgcaggctggaggcatagttcagtttgaagaaagtcgactcatccgtatggcagagaaa
gcagaattctaccaaatttgtgaatttatgtatgaacaagaacaccaatatgacaaaatt
attgattgctacttacgtgacccactaagagaggaagaagtctttaactacattcacaat
atcttatccattcctggatacagtgtggaggagaagcagtctgtatggcagaaggctatg
gatcatattgaggaacttgtggccctgaagccctgtaaagctgcagagctggttgctact
cacttttctgaacagatcgaaacagtcattaagaaactccagaaccaggttttgcttttc
aagtttttaagaagccttcttgacccaagggaaggtattcatgtaaatcaagaatcgctg
cagatatctccctgtataatagagcagttcattgagctcttgtgtcagttcagcccaaac
cacgttattgagacgctgcaagtccttgagtgctaccgcctagaagaaactattcagatt
acccagaagtatcaactttgtgaagtcactgcttatctattagaaaagaaaggagatatt
catggtgccttcttaataatgctaaagagactacaaagcaaacttcaagagataatacgt
caagataaaaataccaaagaggatccctcattgaaggatgttgaagagaccatggtagag
acgattgccctctgccagagaaattcacataatttgaaccaacaacagagagaggcactc
tggtttccgttattggaggcaatgatggcccctcagaagctgtctagttcagcttcacct
catccacactctgaagctctgaaatctttgaccatgcaagttctcaacagtatggcagca
tttattgcccttccatccatcctgcagcgaatcttacaggacccagtttatggaaaagga
aaacttggagaaatccagggccttattttgggaatgttggatacctttaactatgaacag
accctgctggaaacgacaactagccttctaaaccaagatctccattggtcattatgtaac
ctgagagcttcagttaccagaggactgaatcccaagcaggattactgctctatttgtttg
cagcagtacaagagacgccaagaaatggctgatgaaattattgtctttagctgtggccat
ttatatcactcgttctgtctgcaaagcaaagagtgcaccatagaaattgaagggcaaaca
agatggacgtgctacaaatgcagctcaagtaacaaagcaggaaagttgagtgaaaattca
tctgaagttaaaaagggaaggataaccccatcacaggtaaaaatgtccccatcctgtcat
ctgtccaaaggggatcctgctattaaaaaggcaacctcagaacctgttctggatccacag
caaacccaagcatttgatcagctctgccatctctaccgaggaagttccaggctggccctc
ctcacggaactctcccagaatcgcagtggcgagagctgcaggccatttggagggtcccag
agtggccccgccttcaacagcatcttccagaaggagaacttccagctgcagctcattcct
cccccggtgactgaggactga
DBGET
integrated database retrieval system
