Bubalus bubalis (water buffalo): 102413026
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Entry
102413026 CDS
T05912
Symbol
CHD9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
bbub
Bubalus bubalis (water buffalo)
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bbub03036
]
102413026 (CHD9)
Chromosome and associated proteins [BR:
bbub03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
102413026 (CHD9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_CHD1_Hrp3
Motif
Other DBs
NCBI-GeneID:
102413026
NCBI-ProteinID:
XP_025124441
LinkDB
All DBs
Position
18:21190897..21417853
Genome browser
AA seq
2900 aa
AA seq
DB search
MTDPMMDFFDDANLFGETLEGLPDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQGTP
THQKMTDYEQLNQFDSIKFHQVSQSFGSPAEHVLSPHSQFNCSPIHPQNQPNGLFPDVAD
GSPMWGHQTATSISNQNGSPFHQPGHSHSMHQTKSFVAHHDFALFQANEQQTQCTSLRSQ
QNRNNLNPGQNSLSQSKTFMDVNVSGPHRVSVNHPPQMNNASTSQQSLSMQQFSQTSNPS
VHFLKCSSHQEGNFNGPSPNMTSCSVSNSQQFSSHYSFSSNHVSPNSLLQPSAVLAPNHT
NQTLSDFTGSNSFSPHRGIKQESTQHMLNPNTSLNSNNFQMLHSSHPQGNYNSKLSPVHM
NFPDPVDSGTQMGHFSDHVETNGFSSLEENLLHQVESQTEPFTGLDPEDLLQEGLLPQFD
ESAFGQDNSSHVLDHDLDRQFTSHLVTRPSDMVQTQLHNQARSWHSSLSNHQHLHDRTRL
CLQRQPPSSKKSDGSGTYTKLQNTQVRIMSEKKQRKKVESESKQEKANRIISEAIAKAKE
RGERNIPRVMSPENFPSASVEGKEEKKGRRMKSKPKDKESKKTKTCSKLKEKTKIGKLII
TLGKKQKRKNESSDEISDAEQMTQHAFKEEDSQKRRSNRQIKRKKYAEDAEGKQSEEEVK
GSMKIKKNSAPLPGEQPLQLFVENPSEEDAAIVDKILSSRTIKKEISPGVMIDTEEFFVK
YKNYSYLHCEWATEQQLLKDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYVEVDRVL
EVSFCEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQLQASRPDPRHLDR
PPPNIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFL
YEILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMIQQYEMYFRDSQ
GRIVRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLE
HKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAILKPMML
RRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNLVNTMME
LRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGGH
KVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTR
AGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDR
ASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCEEDI
DQILLRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIDAISG
RNSLVIDTPRIRKQTRPFSATKDELAELSEPESEGDEKPKLRRPCERSNGYGRTECFRVE
KNLLVYGWGRWREILSHGRFKRQLNEHDVEIICRALLAYCLVHYRGDEKIKGFIWDLITP
TEDGQTRELQNHLGLSAPVPRGRKGKKVKTQTSSFDIQKAEWLRKYNPEQLLQDEGYKKH
IKHHCNKVLLRVRMLYYLKQEVIGNECQKVFDGVDASDIDVWVPEPDHSEVPAEWWDFDA
DKSLLIGVFKHGYEKYNTIRADPALCFLERVGKPDEKAVAAEQRANDYMDGDVEDPEYKP
APAIFKDDIEDDVSSPGDLVIADGDGQLMEGDKVYWPTQSALTTRLRRLITAYQRTNKNR
QIQQIQPTFPVPASVMQPLYEEATLNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDP
DRGQFDWTKFRAMARLHKKTDDSLEKYLYAFMSMCRRVCRLPSKEELVDPSIFIQPITEE
RASRTLYRIELLRKVREQALRHPQLFERLKLCHPNPDLPVWWECGSHDRDLLIGAAKHGV
SRTDYHILRDPELSFMAAQRNYSQSKMAHSRTSTPLLQQYQVALSASPLTSLPRLLDPKA
VILEDVKVKSENLKEEPQSSEEESMSSEETRTLIKSEPVSPKNGVLPQATGDQKSGGKGE
TDRRMVAARTEPLTPNPASKKQRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSSCSH
SRSGSSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSEEEEVQKRAEGTPHMKAYDE
ESVASLSTTQDETQDSFQMNNGTAESAYILQGGYMLAASYWPKDRVMINRLDSICQTVLK
GKWPSARRSYDANAVASFYTTKLLDSSGAATEYSEPSAPPPAGAAVKEEHDQSTQMSKVK
KHVREKEFTVKIKDEGGLKLTFQKQGLAQRRPLDSEDCAPGQQQYLTRLRDLQGASESSL
ASFPKSLPLSGTPIQSTLGANGVLLDNQPVVKKRRGRRKNVEGVDILFFNRNKPPNHVTL
GLTTSQISTGINPALSYTQPQGIPDTETPVPVINLKDGTRLAGDDAPKRKDLEKWLKEHP
GYVEDLGAFIPRMQLHEGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFA
PPLKDLCRFLKENAEYGVAPEWGDVVKQSGFLPESMYERILTGPVVREEVSRRGRRPKSG
IAKATAAAAAATATSISGNPLLANGLLPGVDLTTLQALQQNLQNLQSLQVTAGLMGMPAG
LSSGGEAKNVAAMFPMLLSGMTGLPNLLGMGGLLTKPTESGTEEKKGNDPKEVEGKKERT
ESQNPENGGENSVSGSPASSTAALSTAAAASPLALNPLLLSNILYPGMLLTPGLNLHIPT
LSQSNTFDVQKNKNSDLGSSKSVEVKEEDSRVRDQEDKGGTEPSPLHENSTDEGSEKADA
SSGSDSTSSSSEDSDSSNED
NT seq
8703 nt
NT seq
+upstream
nt +downstream
nt
atgacagatcccatgatggacttttttgatgatgccaatctgtttggtgagaccttagaa
ggtttgccagatgatgcatttgtacaaccaggacctgtttcactggttgatgaattgaac
ttgggtgcagaatttgaacctttgcacatagactcactgaatcatgttcaaggtactcca
acacatcagaagatgactgattatgaacagttaaatcagtttgattcaattaaatttcac
caagttagtcagtcttttggcagcccagctgaacatgtgttatcgccacactctcagttt
aattgttctccaatccacccccagaaccagcccaatggtttgtttccagatgtagcagat
ggcagtcctatgtggggccatcagacagctactagcatttcaaatcaaaatgggtctcct
tttcaccaaccaggacattctcactctatgcatcaaactaagagctttgtggcacaccat
gactttgccttatttcaggccaatgaacaacaaacacagtgcacttcactacgctcacaa
caaaacagaaataatcttaacccagggcaaaattctcttagtcagtctaaaacttttatg
gatgttaatgtttctggtccacacagagtcagtgttaaccatccaccacaaatgaataat
gcatctacttcacaacagtccctttcgatgcagcaattttcccaaacatcaaacccttca
gtacacttcctcaagtgtagcagtcaccaagaaggtaattttaatggaccttctccaaat
atgacttcatgttctgtcagtaattcacagcagttttcttcacattattccttttccagt
aatcatgtgtcaccaaatagtcttcttcaaccctctgcagttcttgcacctaatcataca
aatcagactttatctgattttactgggagtaattccttttcacctcataggggaatcaag
caagaatcgactcagcatatgctaaatcctaatacatcactgaattcaaataacttccag
atgttgcattcatcacatcctcagggtaattacaattcaaaattatctcctgtgcacatg
aacttcccagatcctgttgactcaggaactcaaatgggccatttcagtgatcatgtagaa
actaatggcttttcatctttggaagagaatttacttcatcaagtggaatctcaaactgag
ccattcacaggacttgacccagaagacctccttcaagaaggtctccttccccagtttgat
gagtcagcatttgggcaagataattcaagtcatgttttagatcatgaccttgatcggcaa
tttacttcacatcttgtaacacggccttctgatatggttcaaactcagttgcacaatcag
gctcggagttggcattcatcactttctaatcatcagcatttacatgatagaactcgcctg
tgtttacagcgacagcctccatcttccaagaagagtgatggttctgggacatacactaag
ttgcagaatacccaggtgaggatcatgtccgagaagaagcagagaaaaaaggtggaatca
gaaagcaagcaagaaaaggctaatcgtataatatcagaggccatagcaaaagcaaaggag
cgaggggaacgcaatattccacgagtaatgagccctgaaaactttcctagtgcttcagtt
gaaggaaaagaggaaaagaaaggaagaaggatgaagtccaagccaaaggacaaagagagc
aaaaaaacaaaaacttgttctaagttaaaagagaagacaaaaattggcaaactcattatt
acattgggtaagaaacaaaagagaaagaatgagtcttcagatgaaatatctgatgcagag
cagatgacacagcatgcattcaaagaggaagactctcaaaaaagaagatcaaatcgacaa
attaaaaggaaaaaatatgcagaagatgcagaagggaaacaatctgaagaagaggttaaa
ggctctatgaaaataaaaaagaattcagctcctttacctggtgaacagcctttacagtta
tttgtggagaatccaagtgaagaagatgctgcaattgtggacaagatactatcttctaga
actataaaaaaggaaatatcacctggagtgatgattgatacagaagaattttttgtaaaa
tacaagaattactcttatcttcactgtgaatgggccacagaacagcagcttctgaaagat
aaaaggatccagcagaaaatcaaacgattcaaattgagacaagcacaaagagcacatttt
tttgcagacatggaagaagaaccatttaacccagactacgttgaagtagacagagtgtta
gaagtctctttttgtgaagataaagatactggcgagcctgttatttactatttagtaaag
tggtgctcattaccgtatgaagatagtacttgggaactaaaagaagatgtagatcttgca
aaaatagaagagtttgagcaattgcaagcttcaaggcctgacccaagacatttggatcgt
cctcctcctaatatttggaaaaaaatagatcaatccagggattataaaaatggcaatcaa
ctcagggaataccaactggaaggactcaactggctcttattcaattggtacaatagacga
aactgcattttagcagatgaaatgggtcttggcaaaaccattcaatcaattacattcctc
tacgaaatccttctgactggtataagaggacctttcctgattattgctccactttctact
attgcaaactgggagagagaatttcgtacgtggactgatattaatgttgtggtttatcat
gggagcctgattagcagacaaatgatacagcaatatgagatgtacttcagggactcacag
gggcgtattgttcgaggagcttacagattccaagccatcatcaccacttttgaaatgatt
cttggaggctgtggagagcttaatgcaattgaatggcgatgtgtaattattgatgaagca
cataggttaaaaaataaaaactgtaaacttctagaaggtctgaaactcatgaatctggaa
cacaaggtgcttttgacgggcacacctctccaaaatacagttgaagaactattcagtctt
cttcactttctggagcccctaaggtttccttctgaatcaacgtttatgcaagaatttggg
gatctgaaaacagaggaacaggtgcagaaacttcaggctatcttgaaaccaatgatgtta
agacgattgaaagaagatgtggaaaagaagttggcacctaaggaagaaacgatcattgaa
gtagaacttactaacattcagaaaaaatactaccgggctattctggagaagaacttttca
tttttatccaaaggagcagggcagactaatgtacccaacttagtcaataccatgatggag
ctcaggaagtgctgtaatcacccgtatcttatcaaaggtgctgaggagaaaatacttgga
gaatttagagatacatataatccagctgcttctgattttcatcttcaagcaatgatccag
tctgctggtaaattagtccttattgataaattgcttcccaaaatgaaagcaggaggtcat
aaagtgctcatcttctctcagatggtacgctgccttgatatcctggaggactatcttata
cataaaagatatttatatgagcgaattgatggaagagtcagagggaatcttcgacaagct
gctatagatcgatttagtaaacctgattcggatcgatttgtctttcttctgtgtacccga
gctggtgggttgggcatcaacttaactgcagctgatacatgtataatttttgattctgat
tggaatcctcaaaatgaccttcaggcccaagctcgttgccatagaattggtcagaataaa
gcagttaaagtctaccgactggtgactcgtaactcatatgaaagagagatgtttgaccga
gccagtctgaaactgggtctagataaggctgtgttacagagcatgagtggaagagaaagt
aatgttggtggtattcaacagctttccaaaaaggaaatagaagatctgcttcgaagaggt
gcgtatggtgccattatggaagaagaagatgaaggctctaaattctgtgaagaagatatt
gatcagattttactacgtcgtacaaaaaccattacaattgaatcagaaggacgtgggtca
acatttgccaaggcaagttttgtggcatctggaaaccgaacagatatttcattagatgat
cccaacttctggcaaaaatgggcgaaaaaggcagaaatagatatagatgccatcagtggt
agaaacagcttggttattgacactccaagaattaggaagcaaacaagacccttcagtgcc
acaaaagatgagttagctgaattatctgaacccgaaagtgaaggagatgaaaagcccaaa
cttcggagaccctgtgagcgttcgaatggctatggaagaactgaatgctttagagtagag
aaaaatctgctagtttatggatggggccgatggagagagattctgtctcatggccgtttt
aaaaggcagctaaacgagcacgatgtagaaataatttgccgagccctcttagcatattgc
cttgttcactaccgaggagatgagaaaattaaaggcttcatatgggatctcattactcca
actgaagacgggcagacacgagagctacagaatcatctaggcctatcagccccggtaccg
agaggtagaaaagggaagaaagtaaagactcaaacaagctcatttgatatacaaaaagca
gaatggcttcgaaaatacaatcctgagcaactacttcaagatgaaggctacaaaaaacat
ataaaacaccactgtaataaagttttgcttcgtgtaaggatgctgtattatctaaagcaa
gaagtcattggaaatgagtgtcagaaagtttttgatggagttgatgcaagtgacattgat
gtttgggtcccagaaccagaccactcagaagttccagctgagtggtgggattttgatgct
gataagtcactccttattggagtttttaaacatggttatgaaaaatataacactatccga
gcagacccggcattgtgcttcttggaaagagtgggaaaacctgatgagaaagcagttgct
gcggaacagagggcaaatgattatatggatggggatgtggaagatccagaatacaaacct
gccccagctatctttaaagatgatatagaggatgatgtttcctcaccaggagatcttgtt
atagcagatggagatggtcagctgatggagggtgataaagtttattggcctactcagtca
gctttaactacccgtttgaggcgtctcattactgcatatcagcgtactaataaaaacaga
caaatccagcagatacaacctactttccctgtgcctgccagtgttatgcagcctctttat
gaagaagccactcttaaccctaaaatggcagccaagatagaaagacagcagagatggaca
agaagagaagaagctgatttttacagagttgtatctacatttggagtggtatttgatcct
gacagaggccagtttgattggacaaaatttagggctatggctcggctacataagaaaact
gacgatagcttagagaaatatctgtatgcattcatgtcaatgtgtcggagggtttgtcgt
cttccttccaaagaagaattggtggatccaagtatttttatccagccaatcacagaagaa
cgtgcttctcggactttatatcgcattgaacttctaaggaaagtaagggaacaggccctc
cgacatccacaattgtttgagcgcttgaagctttgccatccaaatccagacttaccagtc
tggtgggaatgtggctctcatgatagggacttgctcatcggagctgctaaacatggggtg
agccgaacagactatcatattcttcgggaccctgaactctcatttatggccgctcagagg
aactacagtcaaagtaagatggctcattcaaggacttctaccccacttttacagcaatat
caagtagcactttctgcttctcctcttacctctctacctaggctcctagatcctaaagct
gttattctagaggatgtgaaagttaaaagtgaaaaccttaaagaggagcctcagtcttct
gaagaagagtctatgtcttctgaggaaaccaggacactaataaagtctgagcctgtaagt
ccaaagaatggtgttttaccacaggctactggagaccagaaatctggtggaaaaggtgaa
acagacagacgcatggttgcagccagaacagagcctctaactccaaacccggcttctaag
aaacagcgagtccacaagagaggatcagagtctagttctgattctgactctgattctgag
agatcatcctgttcttccagatcatcttcttcctcgtcttcctcctcttcgtgttcccac
tctcgatcaggctctagctcttcttcttcctcctcttgttcttcagcatcatcttcatcc
tcatcctcatcttcctcttcctcatcctcctcctcatcttcatcagaagaaagtgacagt
gaagaagaggaagtccaaaagcgagcagaaggtacccctcacatgaaagcctacgatgaa
gaaagtgttgcatcactgagcactacccaggatgagacccaggatagtttccagatgaac
aacgggaccgcagaatctgcttacatcctacagggtggatacatgctggcagcgtcatat
tggccaaaggatcgtgtgatgatcaaccggctggacagtatttgtcaaacagtcctgaaa
gggaagtggccttcagctagaagaagttacgatgccaacgcagtggcttctttctatacc
acaaagctgctggacagctctggtgcagccacagaatatagcgagcccagcgcgccccct
cctgcaggtgccgcagtcaaagaagaacatgaccagtcaacacagatgtcaaaggtgaag
aagcatgtacgagaaaaggagtttacagtgaaaatcaaagacgaaggtggtttgaagttg
acatttcagaagcaagggctcgctcagagaaggccactggacagtgaagactgtgctcct
gggcagcagcagtacctcactcgacttcgggatcttcaaggtgcgtcagagagcagcctc
gccagtttcccaaaatccctaccactatcaggtactcccattcaatcaacccttggtgcc
aatggagttttattagacaaccagcctgtagtcaaaaaaaggcggggaaggaggaagaat
gtagaaggtgttgacatcctcttttttaacagaaataaaccacctaatcatgttacgtta
ggcttaaccacctcacagatttctacagggataaatccagcattatcctatactcaacct
caaggaattcctgatacagaaactcctgttccagttattaaccttaaagatgggacaaga
cttgcaggcgatgatgcaccgaagagaaaggatttggaaaagtggcttaaggagcaccca
ggttatgtggaagatttaggagcttttattcctcgaatgcaactccatgaggggagaccc
aaacaaaaaaggcatcgctgcagaaaccccaataaattagatgttaatagcctcactgga
gaagaacgtgttcagctaattaacagaagaaatgccagaaaggttggaggtgcatttgct
ccccctttgaaagatttgtgtcggttcctgaaagaaaatgcagaatatggagtagctcct
gaatggggagatgttgttaagcagtctggatttcttccagaaagtatgtatgaacgtatt
ctcactggtcccgtggtaagagaggaagtaagcaggcgagggagacgacctaaaagtgga
attgcgaaggccacggcggcggcggcggctgcaactgccaccagtatttcaggcaatcct
ttgttagccaatggattactgccaggcgtggacctcacaactcttcaggccttacaacaa
aacctacaaaacttgcaatcactgcaagtgactgcagggctgatgggaatgcctgctggc
ctttcttctggaggagaagctaaaaatgtggccgccatgttccccatgctgctgtcggga
atgactgggttgccaaatctgttgggcatgggagggctcctgacaaagccgacagaatcc
ggaacagaagaaaaaaagggaaatgaccctaaggaggtggaagggaaaaaagaaaggaca
gagagccaaaaccccgagaacggcggtgaaaactctgtgtcaggttctcctgcatcctct
actgctgcattaagtacagctgcagctgccagcccattagctctgaacccactgttacta
tctaatattctttatccagggatgcttctcactccaggccttaatcttcatattccaact
ttgtctcagtccaacacttttgatgtacagaaaaacaaaaacagtgacttgggctcatct
aagtctgtggaagtaaaggaagaagattccagagttagagatcaggaagacaaaggggga
actgaaccgagtcctctccacgaaaacagcacagatgagggttcagagaaagccgatgct
tcatctggatctgatagtacatcatcgtcatccgaggattcagattctagtaatgaagac
tga
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integrated database retrieval system
