Bubalus bubalis (water buffalo): 102414202
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Entry
102414202 CDS
T05912
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03015
mRNA surveillance pathway
bbub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102414202
09123 Folding, sorting and degradation
03018 RNA degradation
102414202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102414202
03041 Spliceosome [BR:
bbub03041
]
102414202
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
102414202
mRNA cycle factors
Stress granule specific factors
102414202
Spliceosome [BR:
bbub03041
]
Complex C
Other components
Complex C specific factors
102414202
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RBD_RDR6
TEX47
HSBP1
Motif
Other DBs
NCBI-GeneID:
102414202
NCBI-ProteinID:
XP_044802291
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All DBs
Position
7:66733488..66735435
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AA seq
648 aa
AA seq
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MGDLRSDVTEAMLYEKFSPAGPVLSIWACRYMITRRSLGYAYVNFQQPADAERALDTMNF
DVIKGKPIRIMWSQRDLSLRKSGXGNVFIKNLEKSIDDKALYDTFSAVGNILSCKVVCDE
NGSKGYAFIHFETQEAADKAMEKMNGMLLNDCKVFAGRFKSRKEREAELGAKAKEFTNVY
IKNFGEKVDDENLKELFREFGKTLSVKVMRDPIGKSKGFGFVSYEKHEEANKAVEEIKGK
EITGKVLFVGHAQKKVEWQAELKQKFEQLKQEMISRYQGMNLYIKNLDETIHDKKLRKEF
SPFGSIASAKVMLENGRSKGFGFVCFSSPEEATKAVREKNGCIVGSKPLYVALDQRKEER
KAHLTNQYMQQVAGMRALPTNAILNQFLPAAGGYFVPAVPQTQGRPLYYTPNQLAQMRPN
PRWQQGGRSQGFQGMPSAICQSGPRPDLRHLAPTGNAPASGGLPTTTQRVGSECPDRLAM
DFGGAGATQQGLTKSCQSGGVPTAVQNLAPRAAVAATAPWAVAPYKYASSICSPHPAIQP
LQAPLPAVHVQGQEPLTASILATASLPTQEQKQMLGXRLFPLIQTMHSNLAGKITGMLLE
INSSELLHMLESPESLCSKVEEAVEVLQAHHAKKEAAQKVDAVAAATS
NT seq
1948 nt
NT seq
+upstream
nt +downstream
nt
atgggtgacctgcgttcagacgtcaccgaggccatgctgtacgaaaagttcagtcctgca
gggcctgtgctgtccatctgggcctgccgctatatgatcacccgccgctccctgggttat
gcctacgtcaacttccagcagccggccgacgctgagcgggccttggacaccatgaacttt
gatgtaattaagggaaagccaatccgaatcatgtggtctcagagggatctgtctctgaga
aaatctggtgtggaaacgtcttcatcaagaacctggagaaatctatagatgacaaggcac
tttatgatactttttctgctgtggggaacattttgtcctgcaaggtggtgtgtgatgaaa
acggttctaagggttatgcctttatccacttcgagacccaggaggctgccgacaaggcca
tggagaagatgaacggcatgctcctcaacgactgcaaagtgtttgcaggcagattcaagt
ctcgaaaagagcgggaagctgaacttggagccaaagccaaggaattcaccaatgtttaca
taaaaaacttcggggaaaaggttgatgatgagaatctgaaagagctatttagagagtttg
gtaagaccctaagtgtcaaggtgatgagagatcccattgggaaatccaaaggctttggct
ttgtgagttatgaaaaacacgaggaggccaataaggctgtggaagagataaagggaaaag
aaatcactgggaaggtccttttcgttggccatgcacaaaagaaagtggagtggcaggccg
agttaaagcaaaaatttgaacagctgaagcaggagatgattagtcgctatcaggggatga
atctctacattaaaaacttggatgaaaccatccatgacaagaagttaaggaaagagtttt
ctccttttggatcaatcgccagtgctaaggtgatgctggagaatgggagaagcaaaggat
ttggctttgtctgcttctcgtcccctgaagaggcaaccaaagcagtcagggagaagaatg
gatgcatcgtgggctccaagccactgtatgtcgctctggaccagagaaaggaggagagaa
aggctcacttgaccaaccagtatatgcaacaggtggctgggatgagggcactgcccacca
atgccatcttaaatcagttcctgcctgcagctgggggctactttgtgccagcagttccac
agactcagggaagacctctgtattacacacctaaccagttagcacaaatgaggcctaatc
cacgctggcagcaaggtgggagatctcaaggcttccaaggaatgccaagtgctatatgcc
agtctgggcctcgtccagatcttcgccatctggctccaactggtaatgctccagcttctg
gcggcctccctactaccactcagagagttgggtctgagtgccctgaccgcttggctatgg
actttggtggggctggtgccacccagcaagggctgactaaaagctgccagtctggaggtg
ttcctacagctgtgcagaacttagcgcctcgtgctgctgttgctgccactgctccttggg
ctgttgcaccttataaatatgcctccagcatctgcagtcctcaccctgccatccagcccc
tgcaggcacccctgcctgcagtccacgttcaggggcaggagccgctgaccgcctccattc
tggccacagcaactccctccccacccaggaacagaagcagatgctgggttaacgtctgtt
cccactcatccagacgatgcactcgaacctggctgggaagataactgggatgctgctgga
gatcaacagctcggagttgctgcacatgctggagtcccccgagtctctctgctccaaggt
ggaggaggctgtggaggtccttcaggctcatcatgccaagaaagaagctgctcagaaggt
ggacgctgttgctgctgctacctcttag
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