Bubalus bubalis (water buffalo): 102414369
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Entry
102414369 CDS
T05912
Symbol
NXF1
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03008
Ribosome biogenesis in eukaryotes
bbub03013
Nucleocytoplasmic transport
bbub03015
mRNA surveillance pathway
bbub05014
Amyotrophic lateral sclerosis
bbub05164
Influenza A
bbub05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102414369 (NXF1)
03015 mRNA surveillance pathway
102414369 (NXF1)
03008 Ribosome biogenesis in eukaryotes
102414369 (NXF1)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
102414369 (NXF1)
05168 Herpes simplex virus 1 infection
102414369 (NXF1)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
102414369 (NXF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102414369 (NXF1)
03009 Ribosome biogenesis [BR:
bbub03009
]
102414369 (NXF1)
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
102414369 (NXF1)
mRNA cycle factors
Stress granule specific factors
102414369 (NXF1)
Ribosome biogenesis [BR:
bbub03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
102414369 (NXF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_4
UBA_8
LRR_8
LRR_9
Motif
Other DBs
NCBI-GeneID:
102414369
NCBI-ProteinID:
XP_006064574
LinkDB
All DBs
Position
5:complement(122512036..122524652)
Genome browser
AA seq
623 aa
AA seq
DB search
MKQEFCLLPGVKEHDDRVSFPQRRKKGRGPFRWKSGEGNRRSGRGGSSVRSSRLEDDDRD
VAMSDVQDAPRVRYTPYAARPNRRGDNWNERTRIHVTLPLRRDRSAAERGGAGTSQDGTS
KNWFKITIPYGRKYDKSWLLNVIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVN
YKILDRENRRISIIINSSSPPHSVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDP
DLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNKLYRLDDLSSIVQKAPNLKIL
NLSGNELKSERELDKIKGLKLEELWLDGNTLCDTFRDQSTYISAVRERFPKLLRLDGHEL
PPPIAFDVEAPTTLPPCKGSYFGTETLKNLVLHFLQQYYTVYDSGDRQRLLDAYHDGACC
SLSIPFTPQNPARSNLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDI
NSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFVAVPASNSGLCIVNDELFV
RNASADEIQRAFAMPAPTPSSSPVPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDY
TRSAQAFTHLKAKGEIPEVAFMK
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaggagttctgcctgctgccaggagtgaaagagcatgatgatcgagttagtttc
cctcaaagaagaaagaaaggccgaggccctttccggtggaagtccggcgaagggaaccgg
aggtctggaagagggggctccagcgttcggtcctcccgcctggaggacgacgacagagac
gtggcaatgagcgatgtccaggatgctccccgagtacgatacaccccctatgctgcacga
cccaaccgtcggggtgataactggaacgagcggactcgaattcatgttactctgcccctg
cggagagatcggtctgctgcagagaggggaggggctggcaccagccaggacgggacgtcc
aagaactggtttaagattacaatcccttacggcaggaaatacgacaagtcatggctcctg
aatgtgattcagagcaagtgcagtgtcccttttactcccattgagtttcactatgaaaac
acacgggcccagttttttgtggaggacgccagtacggcctctgcactgaaggctgttaac
tataagattttggatcgggagaaccgcaggatatctatcatcatcaactcctcttctcca
ccccattctgtgcagaatgaactgaagccagaacaagtagagcagctaaagctgatcatg
agcaaacgatacgatggctcccagcaagcacttgacctcaagggcctccgttcagaccca
gatttagtggctcagaacattgacgttgtcctgaaccgtagaagctgcatggcagccacc
ctgcgaatcatcgaagagaacatccccgagctattgtcattgaacttgagcaacaacaag
ctctaccggctggatgacttgtccagcattgtgcagaaagcacccaatctaaagatccta
aatctctctggaaatgagctgaagtctgagcgggagttggacaagatcaaagggctgaag
ctggaagagctctggcttgacggaaacaccctgtgcgacaccttccgagaccagtccact
tacatcagcgccgttcgagagcgatttccaaaactactgcgactggatggccatgagtta
ccccccccaattgcctttgatgttgaagcccccacaacgttaccaccttgcaagggaagc
tactttggaacagagaccctgaagaatctggtcctgcacttcttgcagcagtactatacg
gtttatgactcgggagaccggcagcggctcctggacgcctaccatgatggagcctgctgc
tcgctgagcattcctttcaccccccagaaccctgcccgaagcaacttggccgagtacttc
aaggatagcaggaatgtgaagaagcttaaagaccctaccctgcggttccgattgctgaag
cacacacgtctcaacgtggtggccttcctcaatgagttgcccaaaactcagcatgacatc
aattcctttgtggtagacataagtgcacagacaagcacattgctgtgtttctctgtcaac
ggagtcttcaaagaagtggatggaaagtctcgggactccttgcgagcctttacccggacg
ttcgtcgctgttcctgccagcaattcagggttgtgcatcgtcaacgatgagctgtttgtg
cggaatgccagtgctgatgagatccagagagcctttgccatgcctgcacccacaccttcc
tccagcccagtgcccaccctctccccagagcagcaggaaatgctgcaggcattctctacc
cagtctggcatgaaccttgagtggtcccagaagtgcctccaggacaacaactgggactac
accaggtctgcccaggcctttactcacctcaaggccaagggtgagatcccagaagtggca
ttcatgaagtga
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integrated database retrieval system
