Bubalus bubalis (water buffalo): 102414428
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Entry
102414428 CDS
T05912
Symbol
COL1A2
Name
(RefSeq) collagen alpha-2(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub04151
PI3K-Akt signaling pathway
bbub04510
Focal adhesion
bbub04512
ECM-receptor interaction
bbub04611
Platelet activation
bbub04820
Cytoskeleton in muscle cells
bbub04926
Relaxin signaling pathway
bbub04933
AGE-RAGE signaling pathway in diabetic complications
bbub04974
Protein digestion and absorption
bbub05146
Amoebiasis
bbub05165
Human papillomavirus infection
bbub05205
Proteoglycans in cancer
bbub05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
102414428 (COL1A2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102414428 (COL1A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102414428 (COL1A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102414428 (COL1A2)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
102414428 (COL1A2)
09152 Endocrine system
04926 Relaxin signaling pathway
102414428 (COL1A2)
09154 Digestive system
04974 Protein digestion and absorption
102414428 (COL1A2)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
102414428 (COL1A2)
09172 Infectious disease: viral
05165 Human papillomavirus infection
102414428 (COL1A2)
09174 Infectious disease: parasitic
05146 Amoebiasis
102414428 (COL1A2)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
102414428 (COL1A2)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
102414428 (COL1A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bbub00536
]
102414428 (COL1A2)
Glycosaminoglycan binding proteins [BR:
bbub00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102414428 (COL1A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
102414428
NCBI-ProteinID:
XP_006054012
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All DBs
Position
8:11433773..11470247
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AA seq
1364 aa
AA seq
DB search
MLSFVDTRTLLLLAVTSCLATCQSLQEATARKGPSGDRGPRGERGPPGPPGRDGDDGIPG
PPGPPGPPGPPGLGGNFAAQFDAKGGGPGPMGLMGPRGPPGASGAPGPQGFQGPPGEPGE
PGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGH
NGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGP
VGPAGPIGPAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNPGA
NGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGE
PGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGRAGVMGPAGS
RGATGPAGVRGPSGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGP
AGARGEPGNIGFPGPKGPTGDPGKAGEKGHAGLAGARGAPGPDGNNGAQGPPGLQGVQGG
KGEQGPAGPPGFQGLPGPAGTAGEAGKPGERGIPGEFGLPGPAGVRGERGPPGESGAAGP
TGPIGSRGPSGPPGPDGNKGEPGVVGAPGTAGPSGPSGLPGERGAAGIPGGKGEKGETGL
RGDIGSPGRDGARGAPGAVGAPGPAGANGDRGEAGPAGPAGPAGPRGSPGERGEVGPAGP
NGFAGPAGAAGQPGAKGERGTKGPKGENGPVGPTGPVGAAGPSGPNGPPGPAGSRGDGGP
PGATGFPGAAGRTGPPGPAGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGETGASGPPGF
VGEKGPSGEPGTAGPPGTPGPQGLLGLPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGP
PGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNAGPVGAAGA
PGPQGPVGPVGKHGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDKGEPGDKGPRGLPGL
KGHNGLQGLPGLAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRIGQPGAVGPAGIRGS
QGSQGPAGPPGPPGPPGPPGPSGGGYDFGFDGDFYRADQPRSPTSLRPKDYEVDATLKSL
NNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGET
CIRAQPEDIPVKNWYRNSKAKKHVWVGETINGGTQFEYNVEGVTTKEMATQLAFMRLLAN
HASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTN
EWKKTIIEYKTNKPSRLPILDIAPLDIGGADQEIRLNIGPVCFK
NT seq
4095 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatacgcggactttgttgctgcttgcagtaacttcgtgcctagca
acatgccaatccttacaagaggcaactgcaagaaagggcccaagtggagatagaggacca
cgcggagaaaggggtccaccaggcccaccaggcagagatggtgatgacggcatcccaggc
cctcctggcccccctggccctcctggcccccctggtcttggcgggaactttgctgctcag
tttgatgcaaaaggaggtggccctggaccaatggggctgatgggacctcgcggccctcct
ggggcctctggagcccctggccctcaaggtttccagggacctcctggtgagcctggtgaa
cctggtcagactggtcctgctggtgctcgtggcccacctggccctcctggcaaggctggt
gaggatggtcaccctggaaaacctggacgacctggtgagagaggagttgttggaccacag
ggtgctcgtggctttcctggaactcctggactccctggcttcaagggcattaggggtcac
aacggtctggatggattgaagggacagcctggtgctccaggtgtgaagggtgaacctggt
gcccctggtgaaaatggaactccaggtcaaacgggagcccgtggacttcctggtgagaga
ggacgtgttggtgcccctggcccagctggtgcccgtggaagtgatggaagtgtgggtcct
gtgggccctgctggtcccattgggcctgctggccctccaggcttcccaggtgctcctggc
cccaagggtgaacttggacctgttggtaaccctggccctgctggtcccgcgggtccccgt
ggtgaagtgggtcttccaggcctttctggccctgttggacctcctggaaaccccggagcc
aatgggcttcctggtgctaaaggtgctgctggccttcccggtgttgctggggctcccggc
ctccctggaccccggggtattcctggccctgttggcgctgctggtgctactggagccaga
ggacttgttggtgagcccggcccagctggttcgaaaggagagagcggcaacaagggcgag
cctggtgctgttgggcagccaggtcctcctggccccagtggtgaagaaggaaagagaggc
tccactggagaaatcggacccgctggccccccaggacctcctgggctgaggggaaatcct
ggctcccgtggtctacctggagctgacggcagagctggtgtcatgggccctgctggtagc
cgcggtgcaactggccctgctggtgtgcgaggtcccagtggagattctggtcgccctgga
gagcctggcctcatgggaccccgaggtttcccaggttcccctggaaatattggcccagct
ggtaaagaaggtcctgtgggtctccctggtattgacggcagacctggacccattggccca
gcgggagcaagaggagagcctggcaacattggattccctggacccaaaggccccactggt
gatcctggcaaagctggtgaaaaaggtcatgctggtcttgctggcgctcggggcgctcca
ggtcctgatggcaacaatggtgctcaggggccccctggactacagggtgtccaaggtgga
aaaggtgaacagggtcctgctggtcctccaggattccagggtctgcctggccctgcaggc
acagctggtgaagctggcaaaccaggagaaaggggtatccctggtgaatttggtctccct
ggccctgctggtgtaagaggggagcgtgggcccccaggtgaaagtggtgctgctgggcct
actgggcctattggaagccgaggtccttctggacccccagggcctgatgggaacaagggc
gaaccgggtgtggttggtgctccaggcactgctggtccatctggtcctagtggactccca
ggagagaggggtgcggctggcattcctggaggaaagggagaaaagggtgaaactggtctc
agaggtgacattggtagccctggcagagacggtgctcgtggtgctcccggtgctgttggt
gctcctggccctgctggagccaatggggaccggggtgaagctggtcctgctggccctgct
ggccctgctggtcctcgtggtagccctggtgaacgtggtgaggttggtcccgctggcccc
aacggatttgctggtcctgctggtgctgctggtcaacctggtgctaaaggagagagagga
accaaaggacccaagggtgaaaatggtcctgttggtcccacaggccccgttggagctgct
ggtccgtctggtccaaatggcccacctggtcctgctggaagtcgtggtgatggagggccc
cctggggctactggtttccctggtgctgctggacggactggtccccctggacccgctggt
atctctggcccccctggcccccctggtcctgctggcaaagaagggcttcgtgggcctcgt
ggtgaccaaggtccagttggtcgcactggagagacaggtgcctctggccctcctggcttt
gttggtgagaagggtccctctggagagcctggtactgctgggcctcctggaaccccaggt
ccacaaggtcttcttggtcttcctggttttctgggtctcccaggctctagaggtgagcgt
ggtctaccaggtgtcgctggatctgtgggtgaacctggccccctcggcatcgcaggccca
cctggggcccgtggtccccctggtaatgtcggtaatcctggcgtcaatggtgctcctggt
gaagccggtcgtgacggcaaccctgggaatgacggtcccccaggccgcgatggtcaaccc
gggcacaagggggagcgtggttaccccggtaacgcgggtcctgttggtgctgccggtgct
cctggccctcaaggccccgtgggtcccgttggtaaacacggaaaccgtggtgaaccgggt
cctgccggtgctgttggtcctgctggtgccgttggcccaagaggtcccagtggcccacaa
ggtattcgaggtgacaagggagagcctggtgataagggtcccagaggtcttcctggctta
aaaggacacaatgggttgcaaggtctcccgggtcttgctggtcatcatggcgatcaaggt
gctcctggttctgtgggtcccgctggtcccaggggccctgctggtccttctggccccgct
ggcaaagacggtcgcattggacagcctggtgcagtcggacctgctggcattcgtggctct
cagggtagccaaggtcctgctggccctcctggtccccccggccctcctggacctcctggc
ccaagtggtggtggttacgactttggttttgatggagacttctacagggctgaccagcct
cgctcaccaacttctctcagacccaaggattatgaagttgatgctactctgaaatctctc
aacaaccagattgagacccttcttactccagaaggctctaggaagaacccagctcgcaca
tgccgagacttgagactcagccacccagaatggagcagtggttactactggattgaccct
aaccaaggatgtactatggatgctatcaaagtatactgtgatttctctactggcgaaacc
tgcatccgggctcaacctgaagacatcccagtcaagaactggtacagaaattccaaggcc
aagaagcatgtctgggtaggagaaactatcaacggtggtacccagtttgaatataatgtt
gaaggagtaaccaccaaggaaatggctacccaacttgccttcatgcgtctgctggccaac
catgcctctcagaacatcacctaccattgcaagaacagcattgcatacatggatgaggaa
actggcaacctgaaaaaggctgtcattctgcaaggatccaatgatgtcgaacttgttgcc
gagggcaacagcagattcacttacactgttcttgtagatggctgctctaaaaagacaaat
gaatggaagaagacaatcattgaatataaaacaaacaagccatctcgcctgcctatcctt
gatattgcacctttggacatcggtggcgccgaccaagaaatcagattgaacattggccca
gtctgtttcaaataa
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