Bubalus bubalis (water buffalo): 102414728
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Entry
102414728 CDS
T05912
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03015
mRNA surveillance pathway
bbub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102414728 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
102414728 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102414728 (PABPC1)
03041 Spliceosome [BR:
bbub03041
]
102414728 (PABPC1)
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
102414728 (PABPC1)
mRNA cycle factors
Stress granule specific factors
102414728 (PABPC1)
Spliceosome [BR:
bbub03041
]
Complex C
Other components
Complex C specific factors
102414728 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_5
RRM_10
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
102414728
NCBI-ProteinID:
XP_025120875
LinkDB
All DBs
Position
15:complement(18660815..18678988)
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AA seq
636 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQ
RVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQ
GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccccatggcctcgctctacgtgggggacctacacccc
gacgtgaccgaggcgatgctctatgagaagttcagcccggccgggcccatcctctccatc
cgggtctgcagggacatgatcacccgccgctccttgggctacgcgtatgtgaacttccag
cagccggcggacgcggagcgtgctttggacaccatgaattttgatgtgataaagggcaag
ccagtacgcatcatgtggtctcagcgtgatccatcacttcgcaaaagtggagtgggcaac
atattcattaaaaatttggataaatccattgataataaagcattgtatgatacattttct
gcttttggcaacatcctttcatgtaaggtggtttgtgatgaaaatggttccaagggttat
gggtttgtgcattttgagacacaagaagcagctgaaagagctattgaaaaaatgaatggg
atgcttctaaatgatcgcaaagtatttgttggaagatttaagtctcgtaaagaacgagaa
gcagaacttggagctagggcaaaagagttcaccaatgtttacatcaagaattttggagaa
gacatggatgatgagcgccttaaggatctctttggcaagtttggacctgccttaagtgtg
aaagtaatgactgatgagagtggaaaatccaaaggctttggatttgtaagctttgaaagg
catgaagatgcacaaaaagctgtggatgagatgaatggcaaagagctcaatggaaaacaa
atttatgttggtcgagcccagaaaaaagtggaacgacagacagaacttaagcgcaaattt
gaacagatgaagcaagacaggatcaccagataccagggtgttaacctttatgtgaaaaat
cttgatgatggcattgatgatgagcgtctccggaaggagttttctccatttggcacaatc
accagtgcgaaggttatgatggagggtggtcgcagcaaaggttttggttttgtatgtttc
tcctccccagaagaagccactaaagcagttacggaaatgaatggtagaattgtggccacc
aagccattgtatgtagctttagctcagcgcaaagaagagcgccaggctcacctcactaac
cagtatatgcagaggatggcaagtgtaagagctgtgcccaaccctgtaatcaacccctac
cagccagcacctccttcaggttacttcatggcagctatcccacagactcagaaccgtgct
gcatactatcctcctagtcaaattgctcaactaagaccaagtcctcgctggactgctcag
ggtgccagacctcatccattccaaaatatgcccggtgctatccgcccagccgctcctaga
ccaccatttagtactatgagaccagcttcttcacaggttccacgagtcatgtcgacacag
cgtgttgctaacacatcaacacaaacgatgggtccacgtcccgcagcggctgcagctgca
gctactcccgctgtccgcaccgttccgcagtacaaatacgctgcgggagttcgcaaccct
caacagcatctgaatgcacagccacaggtcaccatgcagcagcccgctgttcatgtacaa
ggtcaggagcctctgactgcttccatgttggcatctgcccctcctcaagagcagaagcaa
atgttgggtgaacggctctttcctctaattcaagccatgcaccctactcttgctggtaaa
atcactggcatgttgttggagattgataattcagaacttcttcatatgcttgagtctcca
gagtctctccgttctaaagttgatgaagctgtagctgtactccaagcccaccaagcaaaa
gaggctgcccagaaagcagttaacagtgccactggggttccgactgtttaa
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