Bubalus bubalis (water buffalo): 102415930
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Entry
102415930 CDS
T05912
Symbol
CPSF1
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 1 isoform X3
KO
K14401
cleavage and polyadenylation specificity factor subunit 1
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102415930 (CPSF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbub03021
]
102415930 (CPSF1)
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102415930 (CPSF1)
Transcription machinery [BR:
bbub03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102415930 (CPSF1)
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
102415930 (CPSF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
UspB
Motif
Other DBs
NCBI-GeneID:
102415930
NCBI-ProteinID:
XP_006064678
LinkDB
All DBs
Position
15:complement(81419270..81433914)
Genome browser
AA seq
1444 aa
AA seq
DB search
MYAVYKQAHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDSEAPTKNDRSTDGK
AHREHREKLELVASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKT
LSLHYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLIYGTRLVVLPFRRESLAEEHEGLV
GEGQRSSFLPSYIIDVRALDEKLLNIVDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDT
CSIVAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVIFAVNSLLYLNQSVPPYG
VALNSLTTGTTAFPLRTQEGVRITLDCAQAAFISYDKMVISLKGGEIYVLTLITDGMRSV
RAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASTAREAADKEEP
PSKKKRVDATTGWSGGKSVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCANA
AMGEPAFLSEEFQNSPEPDLEIVVCSGYGKNGALSVLQKSIRPQVVTTFELPGCYDMWTV
IAPVRKEQEETLKGEGTEPEPGAPEAEDDGRRHGFLILSREDSTMILQTGQEIMELDASG
FATQGPTVFAGNIGDNRYIVQVSPLGIRLLEGVNQLHFIPVDLGSPIVQCAVADPYVVIM
SAEGHVTMFLLKNDSYGGRHHRLALHKPPLHHQSKVITLCVYRDVSGMFTTESRLGGVRD
ELGGRGGPEAEGQGAETSPTVDDEEEMLYGDSGSLFSPSKEEARRSSQPPADRDPAPFRA
EPTHWCLLVRENGAMEIYQLPDWRLVFLVKNFPVGQRVLVDSSFGQPTTQGEARKEEATR
QGELPLVKEVLLVALGSRQRRPYLLVHVDQELLIYEAFPHDSQLGQGNLKVRFKKVPHNI
NFREKKPKPSKKKAEGGSTEEGTGPRGRVARFRYFEDIYGYSGVFICGPSPHWLLVTGRG
ALRLHPMGIDGPIDSFAPFHNINCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLR
CTAHYVAYHVESKVYAVATSTSTPCTRVPRMTGEEKEFETIERDERYVHPQQEAFCIQLI
SPVSWEAIPNARIELEEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQGEEVTCRGRI
LIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKIFLWSLRASE
LTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSRDAKPLEVYSVD
FMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTFWRTPCRGA
AEGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPR
AFRMLHVDRRVLQNAVRNVLDGELLNRYLYLSTMERGELAKKIGTTPDIILDDLLETDRV
TAHF
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
atgtacgctgtgtacaagcaggcgcatccgcccaccggcctcgagttctccatgtactgc
aatttctttaacaacagcgagcgcaacctcgtggtagccgggacctcgcagctctacgtg
taccgcctcaaccgggactccgaggcgccgaccaaaaatgacaggagcacagatgggaag
gcccaccgggagcaccgggaaaagctggagctggtggcttccttctccttctttggcaac
gtcatgtccatggccagcgtgcagctggccggcgccaagcgggatgccctgcttctgagc
ttcaaggatgccaagctgtcggtggtggagtacgacccgggcacccacgacctcaagacc
ctgtctctgcactacttcgaggagcctgagctgcgggatggcttcgtgcagaacgtacac
acgccgcgggtgcgtgtggaccccgacgggcgctgcgcagccatgctcatctacggcacg
cggctggtggtcctgcccttccgaagggagagcctggccgaggagcacgaggggctcgtg
ggagaggggcagaggtccagcttcctgcctagctacatcatcgacgtgcgggccctggac
gagaagcttctcaacatcgtcgacctgcagttcctgcatggctactacgagcccaccctg
ctcatcctgtttgagcccaaccagacgtggcctgggcgggtggctgtgcggcaggacaca
tgctccattgtggccatctccctgaacatcacgcagaaggtgcaccccgtcatctggtcc
ctcaccagcctgcccttcgactgtacccaggccctggcggtgcccaagcccataggtggt
gtggtgatctttgcggtcaactcgctgctgtacctgaaccagagtgtccctccctacggc
gtggctctcaacagcctcaccaccggcaccactgccttccccctgcgcacccaggaaggt
gtgcggatcaccctggactgtgctcaggcggccttcatctcctatgacaagatggtcatc
tccctcaagggcggtgagatctacgtgctgacactcatcacggatggcatgcgcagcgtc
cgggccttccacttcgacaaggctgctgccagcgtcctcaccaccagcatggtcaccatg
gagcctgggtatctgttcctcggctctcgtctcggaaactcgctgctcctcaagtacacg
gagaagctgcaggagcccccagccagcaccgcccgcgaggctgctgacaaggaagagccg
ccctccaagaagaagcgtgtggacgccaccacgggctggtcagggggcaagtcagtgcca
caggacgaggtggacgagattgaagtgtacggcagcgaggcgcagtcaggcacacagctg
gccacgtactcctttgaggtgtgtgacagcatcctcaacattggaccctgtgccaacgcc
gccatgggcgagcctgccttcctctctgaagagtttcagaacagtccagagccagacctg
gagatcgtggtgtgctccggctatggcaagaacggggccctgtcggtgctgcagaagagc
atccggccccaggtggtgacaacctttgagctccctggctgctatgacatgtggaccgtc
attgcccccgtgcgtaaggagcaggaggagaccctcaaaggggagggcacggagccagag
cctggtgctcctgaggccgaggatgacgggcggagacacgggttcctcattcttagccgg
gaagactctaccatgatcctgcagacggggcaggagatcatggagctggacgccagcggc
tttgccacgcagggccccacggtctttgctggcaacatcggggacaatcgctacatcgtg
caggtgtcgccgctcggcatccgcctgttggaaggagtgaaccagctgcacttcatcccc
gtggacctgggctcccccatcgtgcagtgtgccgtggctgacccctacgtggttatcatg
agcgctgagggccacgtcaccatgttcctgctcaagaatgactcgtacgggggccgccat
caccgcctggcactgcataagccacccctgcaccatcagtccaaggtgatcacactgtgt
gtataccgggacgtcagcggcatgtttaccactgagagccgcctgggaggagtccgcgac
gagctggggggacgcggcggccctgaggctgagggccagggcgcagagaccagccccacg
gtggacgacgaggaggagatgctctacggggactcaggctccctcttcagccccagcaag
gaggaggcgcgcaggagcagccagccgcccgccgaccgggaccctgcgcccttccgggct
gagcccacccactggtgcctgctggtgcgggagaacggagccatggagatctaccagctc
cccgactggcgcctcgtgttcctggtgaagaacttccctgtgggccagcgcgtcctggtg
gacagctcctttggccagcccaccacccagggcgaggctcggaaggaggaggccacgcgc
cagggcgagctgcccctggtcaaggaggtgctgctggtggcgttggggagtcgccagcgc
aggccctacttgctggtgcatgtggaccaggagctcctcatttatgaggccttcccccac
gactcacagctcggccaggggaacctcaaagttcgcttcaagaaggtcccccacaacatc
aacttccgggagaagaagccaaagccgtccaagaagaaggcggaagggggtagcacggag
gaggggacagggccccgaggccgcgtggcgcggttccgctacttcgaggacatttatggc
tactctggggtgttcatctgcggtccctcgccccactggctcctggtgactggccggggg
gccctgcggctgcaccccatgggcatcgacggccccatcgactcttttgccccgttccac
aacatcaactgcccccgagggttcctgtacttcaacagacagggcgagctgaggatcagc
gttctgcccgcctacttatcctacgacgccccatggcctgttcggaagatcccgctgcgc
tgcaccgcccactacgtggcttaccacgtggagtccaaggtgtacgccgtcgccaccagc
accagcacaccttgcacgcgcgttccacgcatgacgggcgaggagaaggagtttgagacc
atcgagagagacgagcggtacgtccaccctcagcaggaggccttctgcatccagctcatc
tccccagtcagctgggaggccatccccaacgccaggatcgagctggaggagtgggagcac
gtgacctgcatgaagaccgtgtcgctgcgcagtgaggagaccgtgtcaggcctcaagggc
tacgtggccgctgggacctgcctcatgcaaggggaggaggtcacgtgccgagggcggatc
ctgatcatggatgtgatcgaggtggtgcctgagcctggccagcccctgaccaagaacaag
tttaaggtcctgtatgagaaggagcagaagggccccgtgaccgccctgtgccactgcaat
ggccacctggtgtcggccatcggtcagaagatcttcctgtggagcctgcgggccagcgag
ctgacgggcatggccttcatcgacacgcagctctacatccaccagatgatcagcgtcaag
aacttcatcctggccgcggacgtcatgaagagcatctcgctgctgcgctaccaggaggag
agcaagacgctgagcctcgtgtcccgggatgccaagcccctggaggtgtacagcgtggac
ttcatggtggacaacgcacagctgggcttcctggtgtccgaccgtgaccgcaacctcatg
gtctacatgtacctgccagaagccaaggagagctttgggggtatgaggctgctgcgacgg
gcggacttccacgtgggtgcccatgtgaacacgttctggaggaccccgtgccggggggcc
gctgaggggcccagcaagaagtccgttgtgtgggagaacaagcacatcacgtggttcgcc
acgctggacggtggcatcgggctgctgctgcccatgcaagagaagacctaccggcggctg
ctgatgctgcagaacgccctgaccaccatgctgccccaccacgctggcctcaacccccgt
gccttccggatgctgcatgtggacaggcgtgtcctacagaacgctgtgcgcaatgtgctg
gatggggagctgctcaaccgctacctgtacctgagcaccatggagcgcggggagctggcc
aagaagatcggcaccacacccgatatcatcctggatgacctgttggagacggaccgagtc
actgcccacttctag
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integrated database retrieval system
