Bubalus bubalis (water buffalo): 102416051
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Entry
102416051 CDS
T05912
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
bbub
Bubalus bubalis (water buffalo)
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bbub03036
]
102416051 (SHOC1)
Chromosome and associated proteins [BR:
bbub03036
]
Eukaryotic type
Meiosis-specific proteins
Others
102416051 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
102416051
NCBI-ProteinID:
XP_044794402
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All DBs
Position
3:complement(162885093..162975214)
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AA seq
1468 aa
AA seq
DB search
MFPAFKYCAIDYLNESVVRKKLWRDTLLLRIPSCLYQDDNYPASVIDNKFRRPWTRVSAV
SIWGETDISVLDQWKASLTVDDFLEKKTVTGMVTQLNCEFDEIVPSSNPNSQTEVEEASL
YTHKEYNEFFTFVSCLEKRPSLQAQDLSIDEEIIFVNYLTAYKSQLPTLHTLLSRLKLFL
VKDPLPDFKAQIPTEAKFFRECFSLQGDVKCLVEEDFYMDKEDFCQEKLKDTSSTLLECE
LLVPISHKKEVDIPSLSELKESLNLMPEIINSADENENLSKTEELEMPLTHLDLTNHHSS
VNSLCAELQTFPSSPVCKINLLTAEESANKYHMLWQLESCKSSLNSFLIRVPRIEEPNNQ
YSLTDLKKIFSVEEEKLVVNPVNAEWWKEARLNLTETLEPLSTYLCHNNLSSDDTKLETF
LPTNVPQLEPQLEHEDCSSPLILINEQSTNDHLSPPKKTPSPTKEVSDLHLSDEYVSVER
PRKEEKPKNDLELGYGIIQNKENKDHLELDSTVPSTESSSSSKIEKASFKHGKKWENNLD
LLSDFIMLRNKYPTCTSKTEVTDNDGKDELQNKEEVSLTLQEESPIVCNNKTLEKTNQER
RADNVIEIPASDSQCQAYCLLEAAASPILEKLVCLCTLPAANWKFATVIFDQTRFLLKEQ
EKIISDAIHQGKNEEREMTFKYAALLHLLVTIRDVLLTCNLDTALGYLSNAKDIYKSVFG
SCLYDIWRQLEIVQFIRGKKPETNYKIRELQCQILNWMQSEQQIKVLVIIRMDSYGEKHL
LIKILNKIEGLTLIVLHSNKRKDFLESEGVLNSTSFCVVVPNQYIGADFPWSNFSFVVEY
NFVENSCWTEHCEKLNIPYMAFKVILPDTVLKRSSLLDSFGGFLLEIQIPYMFFASEGLL
NTPEILRLLESNYNITLVERCCSESLKLFGGTEHYVVMTIDEHTAVILQDLEELNCEKAS
DNIIMRLMALSFQYSYCWIILYAKKPLNSEYHLTEKTLHHLALIYAALVSSGLKSEELDV
KLIIAPGVEETALMIRQIADHNLMTSKRDPHEWLDKSWLKVAPSKEEMYLLDFPSVTPLV
AQLMLNKGPSLNWILLATLCQLQELLPEVPEKVLKHFCGITSLFKISPSITESPQISSPQ
ENRDQTRTFTSQSSASGSSDSVIQEHINYQYSDLGETVHEDTNSTSNYTSSFMGLKDMPG
ILPSVSSYNQTSHWTESSCNPNMVQNNSVLTNMEARNVSGNSFLNQNDSESDVFSLGLTE
MNYETIISPIDTQKRVTPHFINYQKKGTHEKKGPIKKELSAPVFSLEGSQPPLHWNFKRN
VWEQQNHSFNLQSGAEQSTCDKWYSQKDNLFINQQKYQSDELEGFICESSNAGTKKTFWK
ELPSVPSLDLSCASDSNVNQKEFNSLYFYQRAGKCLGQKRHSESSSNSGDNNSLTDFMCL
QPAQFKKQRLVYEKVPGRLDGQTRLRFF
NT seq
4407 nt
NT seq
+upstream
nt +downstream
nt
atgtttccagcattcaaatattgtgcaatagattatttgaatgagagtgtagttagaaag
aagttgtggagagatactttattgcttcggatcccttcatgtttatatcaagatgacaat
tatcctgcaagtgttattgataataagtttaggaggccatggacaagagtttcagctgtt
tcaatttggggagagacagatatctcagtcttggatcaatggaaagcaagtctcactgtg
gatgatttccttgagaaaaaaacagttacaggaatggtgacccagcttaactgtgaattt
gatgaaattgttccgagttcaaacccaaactcccaaactgaagtagaggaagccagctta
tatacccataaggaatacaatgaattctttacttttgtcagctgcttagaaaaacgtcca
tcacttcaagcacaagatttgtctattgatgaagaaataatttttgtaaattatttgaca
gcctataaaagtcagctaccaactttgcacactctgttgagtaggctaaaactattttta
gtaaaggatcccttgccggatttcaaagcacaaatccccacagaagctaaatttttcagg
gagtgtttctctcttcaaggagatgtaaaatgtttggtggaagaagatttttacatggat
aaagaggacttttgtcaggagaaactgaaagatacatcatcaactttgcttgaatgtgaa
ttgttagtacctataagccacaaaaaagaagttgatattccatcactctcagaactgaag
gagtcattaaacttaatgccagaaataataaattctgcagatgaaaatgaaaacctttcc
aaaacagaagagttagaaatgccattaactcatctagacctaacaaaccaccattcttca
gtgaattcattatgtgcagaacttcagacatttccatcttctcctgtttgtaaaattaat
ttgcttactgctgaagaatcagctaacaaataccatatgctatggcaattagaaagctgc
aaaagctctctgaactcatttttgatcagagtgccaagaattgaagagcccaacaatcaa
tattcacttacagatttgaaaaagatattttctgttgaagaagaaaaacttgtggttaat
cctgtaaatgcagagtggtggaaagaagcaagactaaatctgacagaaactttggaacct
ctaagtacatatttgtgtcataataatttatcttctgatgatactaaattggagacattt
ttacctacaaatgtgcctcaattagaaccacagttagaacatgaagattgttcctctcct
cttatacttattaatgagcaatctacaaatgatcatttatcacctccaaaaaagactcca
tctccaactaaagaagtatcagatttgcatctttctgatgaatatgtctctgttgaaaga
ccaagaaaagaagaaaaaccaaagaatgacctagaactaggttatggaataatccaaaat
aaagaaaataaagatcacttggaacttgacagcacagtaccatctactgaatcatcttcc
tcttcaaaaattgaaaaagcatcttttaaacatggtaaaaagtgggagaataatttggac
cttttgagcgactttattatgctgcgaaataagtatccgacttgtacctcaaagactgaa
gtcacagacaatgatggaaaagatgaacttcaaaacaaagaagaagtttctttgactctt
caagaagaaagccctattgtttgtaataataaaaccctagagaaaacaaatcaggaaagg
agagcagataatgtcatcgaaattccagcatcagatagccagtgccaagcatattgtctc
ctagaagcagcagcttctcctatcttagaaaaacttgtgtgcctctgtactcttcctgct
gctaactggaaatttgccactgtcatttttgaccaaacaaggttcctcttgaaagaacaa
gaaaaaataataagtgatgctattcatcaaggtaaaaatgaggaaagagaaatgacattc
aagtatgctgctctcttacaccttttggtaacaattagagatgtccttttaacctgtaac
ttggacacagcattgggatatttgtcaaatgcaaaagatatctacaaaagtgtttttggt
tcctgtttgtatgacatttggcgacaactggagatagtacagtttataagggggaaaaag
cctgaaaccaactataagataagagaattgcaatgtcagatactaaattggatgcaaagt
gaacagcaaatcaaggtgctggttataataagaatggattcatatggagaaaaacattta
ctcattaaaatccttaacaaaatagaaggtttgacactgattgtcttacattcaaacaaa
agaaaagactttctggaatccgaaggtgttttaaacagtacaagtttctgtgtagttgta
cccaatcaatacattggagcagatttcccctggagtaatttctcatttgtggtggaatac
aattttgtagaaaactcttgttggactgaacattgtgaaaaattgaatattccttacatg
gcctttaaagtgattcttccagacacagttttaaagagaagcagcttgcttgatagtttt
ggtggttttctcttggaaattcagattccatatatgttttttgcatctgaaggacttctt
aatactccagaaatactacggttgttagaatccaactataacatcacactagtggagaga
tgctgcagcgagtcactgaaactctttggaggtacagagcattatgtggtgatgacaatt
gatgagcacactgctgtaattttgcaggacctagaagaattaaactgtgagaaggcatca
gacaatatcattatgagactgatggcattatcattccagtacagctattgttggataatt
ttatatgccaaaaagccattaaactcagagtaccatcttacagaaaagactcttcatcac
ctagcactgatttatgcagctttggtttcatctgggctaaaatcagaagaactggatgta
aagcttataattgccccaggagtggaagagactgcactgatgattcgacaaattgctgac
cacaatttgatgacctcaaaaagagatcctcatgaatggttggataagtcctggcttaaa
gttgcaccatctaaggaagaaatgtacttacttgattttccaagtgttactccattggtg
gctcagctcatgttaaataaaggaccttcactgaactggatattgttagcaactctttgt
caacttcaggaactcctacctgaagttccagaaaaagtgttaaagcatttttgtggcatc
acttccttattcaagattagtccttccataacagaatcacctcaaatttcatcacctcag
gaaaacagggatcagactagaacctttacttctcagagttcagcttctggctcttcagat
tctgtcattcaagaacatatcaattatcaatattcagacttaggagagacagtacatgaa
gacaccaacagcacttcaaattatacctcttcctttatgggattaaaagacatgccaggc
attttaccatctgtgagttcttacaatcagaccagccattggacagagtctagttgtaac
cctaacatggtacagaataattctgttctgactaatatggaagcaaggaatgtgtctggt
aattcctttctgaaccagaatgattcagagtcagatgtcttttctttgggtctaacagaa
atgaattatgaaactataatatcacccattgacactcagaagagagtcacccctcacttt
ataaattatcagaaaaagggaacacatgaaaaaaaaggacctataaaaaaagagttgtca
gctcctgtcttttcacttgagggttctcaacctcctcttcattggaactttaagagaaat
gtatgggaacaacagaatcattcattcaacttacagagtggtgcagagcagagtacatgt
gacaaatggtactctcagaaagataatttattcattaatcagcaaaaatatcagtcggat
gagttagaaggcttcatctgtgaaagttcaaatgctgggactaaaaagactttctggaaa
gaattaccatctgtccccagtttggatttatcctgtgcttctgattctaatgtaaatcaa
aaagaattcaacagtctttatttctaccaaagagctggaaaatgtttaggacagaaaagg
cactctgagtcttcatctaactcaggagacaacaactcattaacagacttcatgtgctta
caaccagcgcaattcaaaaaacaacgtcttgtgtatgaaaaagtccctggtagacttgac
gggcaaactcgtctgaggtttttttga
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