Bubalus bubalis (water buffalo): 102416180
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Entry
102416180 CDS
T05912
Symbol
RC3H2
Name
(RefSeq) roquin-2 isoform X4
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
bbub
Bubalus bubalis (water buffalo)
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bbub03000
]
102416180 (RC3H2)
04121 Ubiquitin system [BR:
bbub04121
]
102416180 (RC3H2)
Transcription factors [BR:
bbub03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
102416180 (RC3H2)
Ubiquitin system [BR:
bbub04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
102416180 (RC3H2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ROQ_II
Roquin_1_2-like_ROQ
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
Prok-RING_4
zf-C3HC4
zf_CCCH_4
zf-CCCH_UNK
zf-C3HC4_4
Xin
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
102416180
NCBI-ProteinID:
XP_025117417
LinkDB
All DBs
Position
12:complement(93469876..93525035)
Genome browser
AA seq
1111 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDHQSVKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKAMQE
EALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIGHVVQLLYRASCFKVTKRD
EDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQWSSLLYGDLAHKSHMQSII
DKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANIDPNPDAVSPTWEQLENAM
VAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLRQQGGCPRGTNCTFAHSQE
ELEKYRLRNKKINATVRTFPLLNKVGVNNTVTTTAGNVISVIGSTETTGKIVQSTNGISN
AENSVSQLIPRSTDSTLRALETVKKVGKVGTNGQNAAGPSVESVTENKIGSPPKTPVSNV
AATSAGPTSAGTELNSVPPKSSPFITRVPVYPQHSENIQYFQDPRTQIPFEVPQYPQTGY
YPPPPTVPAGVAPCVPRFVRSNNVPESSLPPASMPYADHYSTFSPRDRMNSSPYQPPPPQ
PYGPVPPVPSGMYAPVYDSRRIWRPPMYQRDDIIRSNSLPPMDVMHSSVYQTSLRERYNS
LDGYYSVACQPPSEPRTTVPLPREPCGHLKTSCEEQIRRKPEQWAQYHTQKAPLVSSTLP
VATQSPTPPSPLFSVDFRTDFSENVSGTKFEDDHLSHYSPWSCGTIGSCINAIDSEPRDV
IANSNAVLMDLDSGDVKRRVHLFETQRRTKEEDPIIPFSDGPIISKWGAISRSSRTGYHT
TDPVQATASQGSATKPISVSDYVPYVNAVDSRWSSYGNEATSSAHYIERDRFIVTDLSGH
RKHSSTGDLLSIELQQAKSNSLLLQREANALAMQQKWNSLDEGRHLTLNLLSKEIELRNG
ESDYTEDAADTKPDRDIELELSALDTDEPDGQGEQIEEILDIQLGISSQNDQLLNGTAVE
NGHPVQQHQEEPLEQKRQSLGEDRVILEEQKTILPVTSCFSQPLPVSISNASGLPITTSV
SVGNLILKTHVMSEDKNDFLKSVANGKMVNS
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaggcagctcaatggacagaatttctgtcctgtccaatctgctataatgaa
tttgatgagaacgtgcacaaacccatcagtttaggttgttcacacactgtttgtaagacc
tgcttgaataaacttcaccgaaaagcttgtccttttgaccagactgccatcaacacagac
attgatgtgcttcctgtcaacttcgcacttctccagttagttggagcccaggtaccagat
catcagtcagtaaagttaagtaatttaggtgagaacaaacactatgaggttgcaaagaaa
tgtgttgaagatttggcactctacttaaaaccactaagtggaggtaaagctatgcaagaa
gaggctttgaagttggtgttactggcattagaagatggttctgctctctcaaggaaagtt
ctggtactttttgttgtgcaaagactagaaccaagatttcctcaggcatcaaaaacaagt
attggtcatgttgtgcaactactgtatcgagcttcttgttttaaggttaccaaaagggat
gaagactcttccctgatgcagctaaaggaggaattccgcagttatgaggctttacgcaga
gaacatgatgcccaaattgttcatattgctatggaagcaggactccgtatttcacctgag
caatggtcctcacttttgtatggtgacttggcccataaatcacacatgcagtctatcatt
gataagctgcagtctcctgaatcctttgcaaagagtgttcaggaattgacaattgttttg
caacgaacaggtgacccagctaacttaaatagattgaggcctcacttagagcttcttgca
aatatagaccctaatccagatgctgtttcaccaacttgggagcagctagaaaatgcaatg
gtagctgttaaaacagtggttcatggcctagtagacttcatacaaaattatagtagaaaa
ggccatgagacacctcagcctcagccaaacagcaaatacaagaccagcatgtgtcgagat
ttgcgacagcaaggagggtgtccacgaggaacaaattgtacttttgcccattctcaggaa
gagcttgaaaagtatcgattaaggaacaaaaagatcaatgcaactgtaagaacgtttcct
cttctaaataaagttggtgtaaacaacactgtcacaaccacagccggaaatgtcatttct
gtcataggaagtactgaaacaacggggaaaattgttcaaagtacaaatggaatttcaaat
gcagaaaacagtgtttcccagctaattccacgtagtactgacagtacattaagagctctg
gagactgtgaagaaagtggggaaggttggcaccaatggtcagaatgctgctgggccttct
gtagagtctgtaactgaaaataaaattggctctccacccaagactcctgtaagtaatgta
gcggctacctcagctgggcccactagtgctggaacagagctgaattctgtgcctccaaaa
tccagcccatttatcactagagtaccagtatatcctcagcattctgaaaacatacagtat
tttcaagatccaaggactcagataccctttgaagtcccacagtacccacagacgggatac
tacccaccacctccaacggtaccagctggtgtggctccctgtgttcctcgctttgtgagg
tccaataatgttccagagtcctccctcccacctgcttccatgccatatgccgatcattac
agtacattttcccctcgagatcgaatgaattcttctccttaccaacctcctcctccgcag
ccgtatggaccagttcccccagtaccttctggaatgtatgctcctgtgtacgacagcagg
cgcatctggcgcccacctatgtaccaacgagatgacattattagaagcaattctttacct
ccaatggatgtgatgcactcgtcagtgtatcagacgtctttgcgggaaagatataactca
ttagatgggtattattcagtggcttgtcagccaccaagtgagccaaggacaactgtgcct
ttaccaagggaaccttgtggtcatttgaagaccagttgcgaggagcagataagaagaaag
ccagagcagtgggcacagtaccacactcagaaagcacctcttgtctcttcaactcttcct
gtggcaacacagtcaccaacaccaccttctcctctattcagtgtagactttcgcactgat
ttctctgaaaatgtgagtggcacaaaatttgaagatgatcatctttcccattattctccc
tggtcttgtggcaccatcggttcttgtataaatgccattgattcagagcccagagatgtg
attgctaattcaaatgcggtattaatggacctggacagtggggatgttaagagaagagtg
catttatttgaaactcagagaaggacaaaagaagaagatccaataattccttttagtgat
ggacccatcatctcaaaatggggtgcgatttctagatcttcccgtactggttaccatacc
acggaccctgtccaggccactgcttcccaaggaagtgcaaccaagcccatcagtgtatca
gattatgtaccttatgtcaatgctgttgattcaaggtggagttcatatggtaatgaggct
acatcatcagcacattatattgaacgggacagattcattgttaccgatttatctggtcat
agaaagcattccagtactggagaccttttgagcattgaacttcagcaggccaagagtaac
tcattgcttcttcagagggaggccaatgctctggctatgcaacagaagtggaattccctg
gatgaaggccgtcacctcacattaaatcttctaagtaaggaaattgaactgagaaatgga
gagagtgattatacagaagatgcagctgatactaagcctgatagggatattgagttagag
ctgtcagcacttgatactgatgaacctgatggacaaggtgaacagattgaagagatcctg
gacatacagcttggtatcagttctcaaaatgatcagttgctgaatggaacagcagtagag
aatgggcatccagtccagcagcaccaagaggagcctctggagcagaagagacagagttta
ggtgaagaccgtgtgattctggaagagcaaaaaacaattctgccggtaacttcttgcttt
agccagccactcccagtgtccatcagcaatgcaagtggcctacccatcaccacatctgtc
agtgttggcaacctcattctgaaaactcatgttatgtctgaagataaaaacgacttttta
aaatctgttgcaaatgggaagatggttaatagctga
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