Bubalus bubalis (water buffalo): 102416457
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Entry
102416457 CDS
T05912
Symbol
TDRD12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12 isoform X1
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
bbub
Bubalus bubalis (water buffalo)
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bbub03036
]
102416457 (TDRD12)
Enzymes [BR:
bbub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
102416457 (TDRD12)
Chromosome and associated proteins [BR:
bbub03036
]
Eukaryotic type
Gene silencing
piRNA pathway
102416457 (TDRD12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
DEAD
CS
Gal-bind_lectin
Motif
Other DBs
NCBI-GeneID:
102416457
NCBI-ProteinID:
XP_044788113
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All DBs
Position
18:42826352..42903418
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AA seq
1319 aa
AA seq
DB search
MRSAVITRVSKTRGEDFQIEDPGCFWVVIKGCSPFLDHEVDYQKLNSAMNDFYNSMCQDI
EIKPLKLEEGQVCVVYCQELKCWCRAVIKSIVSSADHYLTECFLVDFARYIPVKSRNIRV
AIETFMQLPYRAKKFRLYCTKPVTLHINFCEDSAEIVRAKKWDSAAIQYFQNILKATTQV
EAKLCAVEEDTFEVYLYVTLKNEKVCVNDDLVAKNFACYVSPMENKNFDSLEKPRLNIKS
ASFSSKLNPALTLWPMFLQGKDSQRMGKSCGLTFLAKSLEHPWPQGAGDLRPTSRLLDKT
VKCNMDSLKDSPKKESEKKQQYISLKDVNKCVESSVCWPTKRGITIYANPDTPAASASCQ
KSSEKPLRSAEKKEYNEKNGCVKLLQFLNPDPLRADGISDLQQLQKLKSGSRQPMAVLRN
KIEPCLSIETAPLSTDLKKALQRNKFPGPSHTESYSWPPIARGCDVVVISHCGNDPLLYL
PPMLTILQTGGCYKSLPSRNGPLAVIVCPGWKKAQFIFELLGDYSASCRPLHPVLLTIGL
HKDEAKNMKLPRGCNVVVTTPHSLLRLLQYQSLLFLRLCHLLLDEVEVLLSEANEQMFAI
LDNLKKNMEVEERESAPHQIVAVGVHWNRHIEHLIKEFMNDPYIVITAMEEAALYGCVQQ
VVVHLCLECEKTSTLLQTLDFIPSQAQKTLIFTCSAAETEIVCKVVESNSIFCLKMHKEM
IFNLKSVSQQWKKKLSSGSHIVLALTDDCIPLLAITDATCVIHFSFPSSPKVFGGRLYCM
SDHFQSLTEQGSAEQGDKKTKSVLLLSERNACHAVGILRYLERADAKIPSELYEFTAGVL
EAKEDRKARRPLCPYLKAFGFCKDRRICPDRHRVNPEVDIPRKLSSQTLPVLGYIKIIPF
YVLNATNYFGRIVDKHEDLCATLNAEMKQYFEDSSNKATVEKIEKFGLYGLAEKSVFHRV
QVLEMHQKEDTWALDNVLVKFIDEGRTELVTRDQLLHLPESFHTLPPQAVEFIVCRVKPA
DNEIEWNPKVTRYIHHKIIGKLHDAKVILALGNTVWIDPMVHITKLSNLKTSVIDYNVRA
EILSMGMGIDNSEHVEQLKKLYKGAKMPSFEESLNQTLVPSSREDSACLPSTQQEDKGSE
RGTDAKTNSENQKHETLPKNTGGASINKTAEPPKSFHPQIKWFQKEDVVILKIKIRNVKD
YKCKYFRDRVVFSAWVGEKFYLADLELQANIIKDDCKCIIKYDEPIITLAKEQRESWCGL
LKQRNPNVAFDFDHWEDCDEDKEDSHFAKVVNSKNLSCNVAGLVETSGKSSDEDENESE
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atgcgatctgcggttatcacaagagtgtccaagacacgtggggaggacttccagattgaa
gatccaggttgcttctgggttgttataaaagggtgtagtccctttttagatcatgaagtt
gactatcaaaaactaaatagtgccatgaatgacttctataacagcatgtgtcaagatata
gaaataaaaccactaaagttggaagaagggcaggtttgtgtggtttattgtcaggaacta
aagtgctggtgcagggcagttattaagtcaatcgtgtcttcagcagaccactacctcaca
gagtgtttccttgtggattttgccagatacattccagtgaaatccagaaacatccgagtt
gccatagaaacttttatgcagcttccctacagagcaaaaaaattcagactgtactgcaca
aaacctgtcacattgcacattaacttctgtgaagacagtgctgaaattgtacgggccaag
aagtgggacagtgcagctattcagtacttccagaacatcctgaaagcgactacccaggta
gaagccaaattgtgtgctgtggaagaagatacttttgaggtttacctttatgtaactctg
aaaaatgaaaaggtttgtgttaacgatgatctggttgcaaagaacttcgcttgttatgtg
tcacccatggagaataagaactttgattctttggagaagccaagattgaatataaagtca
gcatccttttccagtaagctcaatccagcacttactctttggccaatgtttttgcaagga
aaagattctcaaaggatgggaaagtcatgtggtttaacttttctagcaaagtctctcgag
catccgtggccccagggtgcaggtgacctcaggccaaccagtaggctcctggataagact
gtaaaatgtaatatggattcattgaaagattcacctaaaaaagagtctgaaaagaaacaa
cagtacatctccttgaaagatgtaaataagtgtgttgaatcttcagtgtgctggccaaca
aagagaggcataaccatatatgccaatccagacacaccagctgcaagtgcttcatgtcaa
aagtcaagtgagaagccacttagatcagctgagaagaaagaatacaatgagaagaatggc
tgtgtgaaattactgcagtttttaaatcctgatcctttgagagctgatggaatctctgat
ctacagcagttgcagaagctgaagtcggggtcccggcagcccatggcagttttgcgaaac
aaaattgagccctgcttgtccatcgagacagcaccactctcaacagacctgaaaaaggct
cttcaaagaaataagtttccaggccccagccacactgagtcttactcttggcctcccata
gcacgtggctgcgacgtggtggtcatttctcactgtggaaatgaccctttgttgtacctt
ccaccaatgctcacgattctgcagacagggggctgctacaagtcgttgccaagtagaaac
ggacctctggcagtcatcgtgtgccctggatggaaaaaggcccaatttatttttgagtta
ttgggagactatagcgcgtcctgcagacctcttcatcctgtgttgttaacaatcggactc
cacaaagatgaagccaaaaatatgaagcttccaagggggtgcaatgtggttgtcacaaca
ccacatagtctcctgagacttctccagtatcaaagcttattgtttcttagactctgtcac
ctacttttggatgaggtggaagtattactgtctgaggctaatgagcaaatgtttgctata
ttagataacttaaaaaaaaacatggaagttgaagaaagggaatctgccccacatcagatt
gttgcagttggagttcactggaacagacatatagagcatttaatcaaagagttcatgaac
gacccctacattgtgatcacggccatggaagaggctgccctctatggctgcgtccaacag
gtagtagtacatctttgcttagaatgtgaaaaaacttctactttactccagactcttgat
ttcatcccaagccaggcacagaagaccttgatcttcacctgttctgcagctgagacagaa
atagtgtgtaaggtggtagaaagcaattccatattttgcttgaaaatgcataaagaaatg
atttttaatttaaaaagtgtttcacaacaatggaagaagaagttaagttctggttctcac
attgtattagccctcacagatgactgcatcccgctcctggccatcaccgatgccacgtgt
gtcattcacttcagttttccttcctctccaaaagttttcggtggacgcctatattgcatg
tccgatcattttcagagtttaactgaacagggttctgcagaacagggagataaaaagacc
aaatctgtcttgctgctgtcggagagaaatgcctgccacgcagttggtatcctgcgctac
ttggagcgagcagatgccaagatcccgtcagagctgtacgagtttacggcgggggttctg
gaagccaaagaagatagaaaagccagaaggcctctttgtccatatcttaaggcttttggt
ttttgcaaagacagaaggatctgtcctgaccggcaccgtgttaatccagaagtagacata
ccaaggaagttatccagccaaactctaccggtgcttggatacataaaaataatacccttt
tatgttttgaatgcaacaaattactttggtcgtatagttgataaacatgaggatctttgt
gcaactcttaatgctgagatgaaacagtattttgaagactccagtaataaagcaactgtg
gaaaagatagagaaatttggattatatgggttagcagaaaaatcagtttttcacagggtt
caggtgttggagatgcaccagaaggaggacacgtgggccctggataatgtccttgtgaaa
ttcatagatgaaggcaggactgaactcgtcacaagagaccagttgctgcacctcccagag
agtttccacacactgcccccccaagctgtggagtttatcgtttgtagagtgaaacccgct
gacaatgaaattgaatggaatccaaaggttactaggtacattcatcataaaattattgga
aaactgcatgatgcaaaagtgatactggctttaggaaatacagtttggattgatccaatg
gtgcacattacaaaactttcaaacttgaaaacttctgtcattgattataatgttcgagct
gaaattttgtcaatgggaatgggcattgataactcagaacatgtagagcaactgaaaaaa
ttatacaaaggagctaaaatgccatcttttgaagaaagcctgaaccagaccctggtacct
tcttccagagaagacagtgcttgtctgccgagcacacagcaagaggacaagggctcagag
agaggaactgatgccaagacaaactcagaaaaccaaaagcatgaaactttacctaaaaac
actggaggtgcttccattaacaaaactgcagagccgccgaaaagcttccacccacaaata
aaatggttccaaaaagaggatgtggtcatactgaagataaaaataaggaatgtaaaagat
tataaatgtaaatactttagagatagagttgttttcagtgcctgggtaggagagaaattt
tacttggctgatttggagctgcaagccaacataataaaagatgattgcaaatgcataatt
aaatatgacgaacctataatcactcttgcaaaagagcaaagggagtcttggtgtggctta
ctcaaacagaggaatcccaatgtggcgtttgattttgatcactgggaagactgtgatgag
gataaggaggatagccactttgccaaagttgtaaactctaaaaacctgtcctgcaacgtg
gcaggcttggttgagaccagtggcaaaagttcggatgaagatgaaaatgagagtgaatga
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