Bubalus bubalis (water buffalo): 102416580
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Entry
102416580 CDS
T05912
Symbol
CPSF6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03015
mRNA surveillance pathway
bbub03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102416580 (CPSF6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
102416580 (CPSF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102416580 (CPSF6)
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
102416580 (CPSF6)
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Gene cluster
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
102416580
NCBI-ProteinID:
XP_006064331
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Position
4:75814812..75847608
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AA seq
589 aa
AA seq
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MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTV
GDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN
GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQM
SGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPGNLIKHLVK
GTRPLFLETRIPWHMGHSIEELPIFGLKAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPL
AGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPF
PPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDP
YGRPPPYDRGDYGPPGREMDTARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGS
AIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSGSRRRERSRERDHSRS
REKSRRHKSRSRDRHDDYYRERSRERERHRDRDRDRDRERDREREYRHR
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtgtggaccatatagacatttacgcggatgtgggcgaagagttcaaccag
gaagctgaatatggtgggcatgatcagatagatttgtatgatgatgtcatctctccatct
gcaaataatggagatgccccggaagatcgggattacatggatactctcccaccaactgtt
ggtgatgatgtgggtaaaggagcagcaccaaatgttgtctatacatatacgggaaagaga
attgcattgtatattgggaatctaacatggtggacaacagatgaagacttaactgaagca
gttcattctttgggagtaaatgatattttggagataaagttttttgaaaatcgggcaaat
ggccagtcaaaggggtttgcccttgttggtgttggatctgaagcatcctcaaaaaagtta
atggatctgttgcctaagagagagcttcatggtcagaatcctgttgtaactccatgcaat
aaacagttcctgagtcaatttgaaatgcagtccaggaaaactacacaatcaggacaaatg
tctggggaaggtaaagctggtcctccgggaggcagttcacgtgcagcatttccacaaggt
ggtagaggacggggccgttttccaggggctgttcctggtggggacagatttcctgggcca
gcaggaccaggagggccacctccaccttttccaggaaatttgatcaagcatcttgttaaa
ggaactcggcctttgttcctggaaactaggattccatggcatatggggcacagcatagag
gaattacccatttttggcctaaaagctggacagactccaccacgcccacccttaggtcct
ccaggcccacccggtccgccaggtcctccacctcctggtcaggttctgcctcctccttta
gctgggcctcctaatcggggagatcgccctccaccaccagttctttttcctggacagcct
tttgggcagcctccattgggtccgcttcctcctggtcctccacctccagttccaggctac
ggcccccctcctggtccaccacctccacaacagggaccacctccacctccaggccccttt
ccacctcgcccacctggccctcttgggccaccccttacactcgctcctcctccgcatctt
cctggaccacctccaggggccccaccgccagctccacatgtgaacccagctttctttcct
ccaccaactaacagcggcatgcctacatcagatagccgaggcccaccaccaacagatcca
tatggccggcctccgccatatgataggggtgactatgggcctcctgggagggaaatggat
accgcaagaacgccattgagtgaagctgagtttgaagaaatcatgaatagaaatagggca
atctcaagcagtgctatttcaagagctgtgtctgatgccagtgctggtgattatgggagt
gctattgagacattggtaactgcaatttctttaattaaacagtccaaagtatctgctgat
gatcgttgcaaagttcttattagctctttgcaagattgcctgcatggaattgaatccaag
tcttatggttctggatcaagaagacgtgaacgatcaagagaaagggatcatagtagatca
cgagaaaagagtcggcgtcataaatcccgcagtagagatcgtcatgatgattattacaga
gagagaagccgagaacgagagagacaccgggaccgggaccgagaccgggatcgagagcgt
gaccgagagcgcgagtatcgtcatcgttag
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