Bufo bufo (common toad): 120977336
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Entry
120977336 CDS
T07950
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
bbuf
Bufo bufo (common toad)
Pathway
bbuf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120977336 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bbuf03041
]
120977336 (PRPF4)
Spliceosome [BR:
bbuf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
120977336 (PRPF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
PRP4
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_EML
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_SCAP
WD_LRWD1
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
WD40_like
Ge1_WD40
WD40_RFWD3
Beta-prop_WDR11_1st
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
120977336
NCBI-ProteinID:
XP_040261173
LinkDB
All DBs
Position
8:8793735..8810019
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AA seq
506 aa
AA seq
DB search
MSDDEGAPVVKRSRIFYGSLADKEKERITRGEFSLGRTAVKAGIEAGNINIGGGESFDLE
EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNV
LSVVGTDALKKTKKEDEKAKASREEYQHTWYHEGPNLLKTARLWIARYSLPRAAQRLENA
REYRHIPESIRTSQKQDLNNDLRSVNNFCSQIGDDRPLSFCHFSPNCKLLATACWSGLCK
LWSIPDCQPIRTLRGHNTNVGAIVFHPKSTVSLDEKDVNLASCAADGSVKLWNLESDEPV
ADIEGHTVRVARVTWHPSGRFLGTTCYDKSWRLWDLEAQEEILHQEGHSKGVYDLAFHSD
GSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYSVNFSPNGFHIATGSGDNTCKVWDL
RQRRCIYTIPAHQNLISAVKFQPTNGHYLLTGAYDNTAKIWTHPLWSPLKTLAGHEGKVM
GVDISSDGELIATCSYDRTFKLWMTE
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgatgagggcgctcctgtggtgaagaggtctcgtattttctatggcagcctg
gcggataaagagaaggaacggatcaccaggggggagttttcattggggagaacggcggta
aaggccgggatcgaggccgggaacatcaacatcggaggaggggagtccttcgacctagag
gagcacatcagtgagaggcaggcggaggtcctcgccgagttcgagcgtaggaagcgagcg
cgacagatcaatgtgtccactgacgactcggaggtgaaggcctgtctgagggccctcggg
gagcctatcactctttttggagaggggcccgcggagcggagagagaggctgcgaaatgtc
ctctccgtggtcggcacagacgccctgaagaagacgaagaaggaagatgagaaagccaag
gcatcgcgtgaagagtatcagcacacctggtatcatgaggggcccaacttgctgaaaacc
gcacgactgtggatagcgcgatattctttaccacgtgccgcacagcgactggaaaacgcg
cgagaatacaggcacatcccagaatccatcagaacatctcagaaacaagatctgaacaat
gatctgcgatccgtgaacaatttctgcagtcagatcggagacgatcgccctctgtccttc
tgtcactttagtcccaactgcaaactcttggcgacggcgtgctggagcggactctgcaaa
ctttggtcaattccagactgtcagcccatacggactttaagagggcacaacacaaacgta
ggcgccatagtctttcatcccaagtccacggtgtcgctggatgagaaggacgtaaatctg
gcgtcctgcgccgcggacgggtctgtcaaactgtggaacctggagagtgatgaaccagtt
gcagatattgaaggacatactgtgagggtggcgagagtgacgtggcatccatctgggcgt
tttctgggcaccacatgctatgacaaatcctggcgcttgtgggacctggaggcgcaggag
gaaattctgcatcaggagggtcacagtaaaggagtatatgacctcgccttccacagcgac
ggctccctcgctggtaccggaggtctggacgcctttgggcgagtgtgggatttgcggact
ggtcgctgcattatgttcctggaaggtcacctcaaggaaatctacagcgtcaacttctcc
cctaatgggtttcacattgctacgggcagtggggacaacacctgtaaagtgtgggacctc
aggcagcgccgctgcatctacaccatcccagcgcaccagaacctgatcagcgcagtcaag
ttccagcccacaaacggacactacctgctgaccggagcatacgacaacacggccaagata
tggacgcacccgctgtggtctcctctgaagacgctcgccggtcacgaggggaaagtgatg
ggcgtggacatttcctccgatggagaactaatcgccacctgctcctacgacagaactttt
aagctttggatgacagaatga
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