Bufo bufo (common toad): 120980109
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Entry
120980109 CDS
T07950
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
bbuf
Bufo bufo (common toad)
Pathway
bbuf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120980109 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbuf03019
]
120980109 (EDC4)
Messenger RNA biogenesis [BR:
bbuf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120980109 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
120980109 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
Beta-prop_EDC4L
WD40_WDHD1_1st
CelTOS
Beta-prop_TEP1_2nd
ApoLp-III
DUF445
WD40_CDC20-Fz
WD40_Prp19
EIF3I
TPR_Sec16
ARM_ECM29_C
Motif
Other DBs
NCBI-GeneID:
120980109
NCBI-ProteinID:
XP_040264916
LinkDB
All DBs
Position
10:103460814..103610267
Genome browser
AA seq
1379 aa
AA seq
DB search
MMASASNIDVDATQHLRDILKLDRPGDPVNESTGSRKSSSFNGELNGFICDPVAHPEATS
VDGPLLDSSLREVEMPFSDKQVICLSGGDSPPCIEIVGKDVEIVASSDSNICSKARGSNK
VKIQPVAKYDWEQKYYNGNLIAVSNDYLAYATRGSNGTAMIRVLSITTAERILLKGITGS
VTDLAFAHLNSDQLACLDEAGSLFVWKLTMKNGKIIDEIFVHIKRPDPIPLNCNRRIIWC
PYIPDENEDNLSEDSSQTIALLHEDMAEIWDLDIIRANHSSWPTLISDIKEGFISVTGHS
GCLSEGALSPDGTVLATASHDGYVKFWQIYIEGQDQPRSVIKDLSSKMGPCLPCSLRCLH
EWKPHNGRPVSCLLFCDNHKKQDPDVPFWRFLITGADQNRQIKMWCTVSWTCLQTIRFSP
DPFSSSVLPGLKASLDLSAEFLILTDVHRKVLYVMELQQNQENGKAAFTSISEFLLTHPV
LSFGIQDVSRCRFQHTEVLPSEVESDNVSEDDNLEMDEEDSAVLIKLFCVHTKALQDVQI
RFKPHQGPSTETAALSSRDRHDGLATPDQIIDLGTEMCPVSESHHELLPDSLRASADFLL
MPTDSKPKLMTPDAFMMPSVTVQQIVSTSTSLGSLTSVTTLNNLSSSDTSLSRSVDELTL
SPKLKMDNSITGCMSGSSSGSFQASSRTPAVLIPGLSDSLTPKPVVQVSSPNLPIELQSL
EPLVVPQSSPTRERSPDVISSASTVISQDIPEIASVSLQRSYPSSISVVQEENCASNHAP
SMSSAASALQLLSTRSRNTSELGLRPLEFPSSMADSELVSAPGLENSKLKDQMEEVISQP
WPAAPDITRETNNSLIESDRDDEVATFAASLNSFGGKGQSPRLLVKDWNTQVSPRCSPKP
YKKCIKDDIDLPLSPKLAENHANFEHGELMSLLYMQQRELSELRQNQIELMQRLTDHLDA
VQSSIMGHMERVIDTQQQQEQRRLDRILNDGQQRSGQLQEYLSQQLSHSLSGSLCSRLDK
TVREEFKKSIPQCISKSLDPVTAQLSSTIGAKLTSIEGSLKENIGKMVKSKNITDAIGRA
VADALHVPIHTTYREAFQNTVLPAFEKGCQSMFQQINSSFKQGTQEYMQQLETHLKTKKE
NEQEMREPLVTQLQQLLDSLQSTTDQLSSSLSGNVRSEVQQQLHVAVATMQDSILSQVQR
IIKEEVNHAMKEQQAAVTSSIMHAMRSAAGTPIPSSHLDYQSQQTHIMQLLQQGHLNQAF
QQALTASDLNLILYVCETVDSQQVFGQHPCPLTQPVLLSLIQQLSFDLCTRTELKLNYLE
EAVMHLDHNDPVTRDHMGSIVGQVRQKLFQFLQVEPHTSLQKSARRLMIMLQGIVPSIN
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atgatggcttcggcttctaacattgacgtagacgccactcagcacctgagggacattctg
aagctggaccgtcctggagatcctgtaaatgaaagtaccggcagtcgaaagtcaagttct
ttcaatggagagctaaatggcttcatctgtgatcctgtagcacacccagaggccacaagt
gtggatgggcctttgctggacagttctctccgggaagttgagatgccgttctctgacaag
caagtgatttgcctgtctggaggtgactctcctccctgcattgagattgttgggaaagat
gtcgaaattgtggccagtagtgattctaatatttgtagcaaagcaagaggaagcaataag
gtgaaaatacagcccgtggcaaaatatgactgggaacagaagtactacaatggaaatttg
attgcggtgtctaatgactaccttgcatatgctacaagaggttccaatgggacagctatg
ataagagtcctcagcatcaccacagcagagcggattttactaaaagggattactggtagt
gtcaccgacctggcgtttgctcacctcaactccgaccagctggcatgtctggatgaagca
ggaagcctctttgtatggaaactcaccatgaagaatggcaaaataatagacgaaattttt
gttcacataaaaagaccagacccaattccgttaaattgtaatcgacggataatctggtgc
ccctacattcctgacgagaacgaggataatttgtcagaggattctagccagactattgcg
ttattgcatgaagatatggctgaaatctgggatctggacatcatcagagcaaaccatagc
tcctggcctactcttattagtgacatcaaagaaggattcatatctgtgaccggacattct
ggttgtttaagtgaaggagctctgtctcctgatggtacagttttggcaactgctagccat
gatggttacgtgaagttctggcagatttatattgaggggcaagatcagccaagatctgtc
atcaaagacctgtcatcaaagatgggtccatgtttgccatgttctctcaggtgtctccac
gagtggaagcctcacaatggacggcctgtgtcgtgtctgctgttctgcgacaaccataag
aaacaagatcccgatgttccattttggaggtttctcatcacaggggctgaccagaacaga
caaattaagatgtggtgcacagtttcttggacgtgcctacagacaatccggttttctcca
gacccgttcagctcgagtgtcctgccaggattaaaagcttctctagatttatctgcagag
ttcctcatacttactgatgtccacagaaaagttctatacgtaatggagttacaacagaat
caagaaaatggaaaggctgcttttacctccatttctgagtttctgcttactcaccccgtt
ttgagttttggaatccaggatgtgagccgttgccgttttcaacatacagaagttcttcct
tcagaagtagagagcgacaatgtcagtgaagacgataacctggaaatggatgaagaagac
tcggcggttcttataaagctcttttgtgtccacacaaaggctttgcaggatgttcagatc
agatttaaaccgcaccagggcccgtcaacagaaaccgctgccctgtcttcaagagacaga
catgatggtcttgctactcctgatcagataatagatcttggaactgaaatgtgtccggtt
tcagaatcccatcatgaacttctgcctgatagtctaagagcctctgcagactttctgttg
atgccaacagactcgaaacctaaactgatgactcctgatgctttcatgatgcccagtgtt
acagttcagcagattgtctccacttctacaagccttggttcactcacctctgtcactaca
ctaaataatctctcaagcagcgatacttctctctccaggtctgttgatgaacttacactt
agtccaaagctaaaaatggacaatagcataactggttgtatgagtggatcaagtagtgga
agctttcaagcatcttcaagaacccctgcagtgcttattcccggactgtctgactcacta
acacctaaacctgttgttcaggtttcttcacctaaccttcccatcgaactccagagtttg
gaacccttggtggtaccacagtcttccccgactcgtgaacgatctcctgatgtgatatca
agcgcttccacagtcatatcccaagatatcccagaaattgcttctgtgtcactgcaaaga
agttatccgtcatctatatctgttgtccaagaagagaattgtgcatccaatcatgcccca
agcatgagctctgccgcttctgcacttcagcttttatcgacgcgtagccgcaacacatcc
gagcttggactacggccgctggagtttccgtcttccatggctgatagtgagcttgttagt
gcaccaggtctagaaaattcaaagcttaaggatcagatggaggaagttatttcccagccg
tggccagcagcacccgatataacgcgagaaaccaataacagcttaatagaaagtgaccgc
gatgatgaagtggccacatttgcagccagcctaaatagttttggaggaaaggggcagagt
ccacgtctgcttgtgaaggactggaacacccaagtatcgccacgttgttccccaaaaccc
tacaagaagtgcatcaaagatgacatagacctaccattgtctccaaaattggctgaaaac
catgcgaacttcgaacatggggaactgatgtctcttctgtacatgcaacaaagggaactt
tcagagctgcgtcaaaaccagattgagcttatgcaaagactgactgatcatttggatgca
gttcagagctctatcatgggccatatggaacgtgtgattgatacgcaacagcagcaagaa
caaaggagattagacagaatcctaaatgacggacagcaaagaagtggtcagctacaagag
tacctttctcagcaactttcccattctctttctggttcactctgcagtagacttgacaaa
acagtccgtgaagagtttaagaagtccattcctcagtgcatcagtaagagcttggatcca
gtcactgcgcagcttagcagcacaattggagcaaaactgacttctattgagggatcacta
aaggaaaacattggcaagatggttaaatctaagaacattacagatgctataggccgagca
gttgctgatgcacttcatgtacccatccatacaacttacagagaagccttccagaacact
gtacttccagcttttgagaagggttgtcagtctatgttccagcaaataaacagcagcttc
aagcaaggcacccaagagtatatgcagcaattggaaactcatcttaagacgaaaaaagaa
aatgaacaagaaatgagggagcccctggttacacaactacagcaacttctagattctctc
cagtcaacgacggaccagctgtcttcaagcctgagtgggaatgtgagatctgaagtgcag
cagcaattacatgtagctgtagcaactatgcaagactccatcttatcacaggttcaaaga
atcatcaaagaagaagtgaaccatgcaatgaaggaacagcaagcggcggttacctcaagc
attatgcatgccatgagatctgctgcagggacacctattccttcttcccatctcgactat
cagtctcaacagacacacatcatgcagctacttcagcaaggccaccttaaccaagctttt
caacaggccctaacagcttcagacctgaacttgatcctgtacgtctgtgagacggtggac
tctcaacaagtctttggtcaacatccctgccctctcactcagcctgtcctgctctctctc
atccagcagctgtcttttgacctttgtacccgtactgaactcaaactcaactacttagaa
gaagcagttatgcatcttgatcataacgaccctgtgacaagagatcacatgggaagcatc
gtcggtcaagtgcggcaaaaactattccagttcttgcaagtggagcctcatacctcctta
cagaagtcagcaaggcgactgatgattatgcttcaggggattgtcccctccatcaattag
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