Bufo bufo (common toad): 120980319
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Entry
120980319 CDS
T07950
Name
(RefSeq) pre-mRNA-processing factor 39-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
bbuf
Bufo bufo (common toad)
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bbuf03041
]
120980319
Spliceosome [BR:
bbuf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
120980319
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_C
HAT_PRP39_N
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_16
TPR_12
TPR_10
TPR_MalT
HAT
TPR_21
HrpB1_HrpK
Sporozoite_P67
Motif
Other DBs
NCBI-GeneID:
120980319
NCBI-ProteinID:
XP_040265286
LinkDB
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Position
10:complement(52085250..52179186)
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AA seq
736 aa
AA seq
DB search
MADRRRFLPGFSAGSLFSSGQSSQDCDVLTTEDCSGSDEDETKDSDMVGMPPAFRSYWKA
AVTKPSNFTAWTKLVAYSEKERHLAACRKAFDAFLTYFPLSHIYWKKYADIEQHFGIAEE
VEKIFTRAVKSNPLNVALWTSYILFLLKKVNTKLPKSAEKLRGLYVYRVFKEAVDACGME
FHSDDFWSLYIEYEIKHNNFKEAVALYDRVLNIPTQQYEMHFERFKILVSSRSPVEYLTT
EEIIAIHFKIQTEHYNDQIAVEDLPSDDITDSLSESDLQNIRQHVLDTRKQMYLLNEIQV
KKRSTFEEGIKRLYFFASPVNVKQLRNWRKYLDFERSEGQHERIVMLYERCLMPCAMYEE
FWLSYAKYMEEHSVEAARSVFERACRIHLPLKFTLHLQWALFEEKLGQLDSARAIMCNLE
KVLPGVVMVRLRRVNFERRNGNLQEAERLLREAVQNSSGTEMAAFYAVKLSRLLLKLEKD
PEKARDVLVDALKKDPNSPYLHQCLLEVEMARDDVDSVMHCVKRALNSNIHDAIKGILSQ
RRLEFLEDCGNNIKSLLNAYDEHQTLLKQEEFKRKAVHDKNEEEKNKKAKTQSDSASIED
NISTSGIMPHAAASVAPLPSNQSLSTTNTTTAESSTHQTIVNTPKSTNYVQYKPTPSPRG
KVPVPRPTVRPYIPPHRAPIPPLMPSFFGGSVPPPRMSFPPPIPPVPPYTYGPWMQNYMA
YRSPQPWNYNRFYTPF
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atggcggatcgccggaggtttctgcccgggttttctgcagggtccctgttttcttctggc
cagtcttcccaggattgtgatgtcctcaccactgaggactgttcaggaagtgatgaagat
gaaaccaaagattcagatatggttggaatgcccccagcattcagaagttactggaaagca
gctgtaaccaaacccagtaacttcactgcatggactaaacttgtagcatattcagagaaa
gagagacacttggcagcttgtaggaaagcttttgatgccttccttacttatttcccactt
tctcatatttattggaagaagtatgccgacatagagcagcattttggaattgcagaagag
gttgaaaagatctttactcgtgccgtgaagtcaaacccactgaatgtggccttgtggaca
agctacatcttattcttgttaaagaaagtgaatacgaaactgccaaagtctgctgagaag
ttacgaggtctgtatgtttacagggtgttcaaggaagcggttgatgcctgcggcatggag
ttccactcagacgatttctggagcctttacatagaatatgagataaaacacaacaatttc
aaagaagccgtggcgctgtatgatcgcgtcctgaatatccccactcagcagtatgaaatg
cattttgaaaggtttaaaatactagtatccagtcgctctcctgttgaatatttgaccacg
gaggagatcatcgcaatacacttcaaaatacagactgaacattataacgatcagattgct
gtggaggatttaccatccgatgacataacagactctctgtcggaaagcgatctgcagaat
atccgtcagcacgttctagatacaaggaaacagatgtaccttttgaatgaaatacaagtc
aaaaaacgttctacgtttgaagaagggatcaagcgtttgtatttctttgcatcaccagta
aatgttaagcaacttcgaaactggaggaaatatctggattttgagaggtctgagggtcag
catgaacgcatagtcatgctgtatgagcggtgtttgatgccatgtgcaatgtatgaagaa
ttctggctctcgtatgctaagtatatggaagaacattccgtagaagctgcccgttctgta
tttgagagagcctgtcggatccatttgccactgaaatttacactacatcttcagtgggct
ttatttgaagaaaagcttggacaactggattctgctcgagccattatgtgcaacctggag
aaggtgttacctggagtggtcatggtgcgcctaaggcgtgtgaactttgaacggcggaat
ggaaatctgcaagaggcagagagattactcagagaagctgtccaaaatagctcgggcaca
gaaatggcagcattttatgccgtgaaactttctcgactacttctaaagctggagaaagat
ccagaaaaggccagagatgtactagttgacgctctcaagaaggatccgaatagtccttac
ctgcatcagtgcctgttggaggttgagatggccagagatgatgtggatagtgtgatgcat
tgtgtgaaaagagccctgaacagcaacatccatgatgctattaaggggatattgtcacag
agacgtctagagttcctggaagactgcggcaacaatattaaaagtttacttaatgcctac
gatgagcatcaaacactactgaagcaggaagagttcaagagaaaagctgttcatgacaag
aacgaagaagaaaagaataaaaaagctaaaacccagtctgacagcgcctcaatagaggac
aatatttccacctcaggaattatgccgcatgcagccgcatctgtagcacctttaccatca
aatcaaagtctttctacaactaatacaactacagcagagtcctctacacatcaaactatt
gtaaacacaccaaaatcaactaactatgtccagtataaacctacccctagtccaaggggt
aaggttcctgtaccaagacctacagtacgaccatatatacctcctcacagagcaccaatt
ccacctttgatgccctccttttttggaggttctgttcccccaccaagaatgtcttttcca
ccacctatacctcctgttcctccctacacttatggaccatggatgcagaactatatggca
tacaggagcccacagccttggaattacaacagattttacacacccttttga
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