Bufo bufo (common toad): 120986255
Help
Entry
120986255 CDS
T07950
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bbuf
Bufo bufo (common toad)
Pathway
bbuf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120986255 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbuf03019
]
120986255 (XAB2)
03041 Spliceosome [BR:
bbuf03041
]
120986255 (XAB2)
Messenger RNA biogenesis [BR:
bbuf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120986255 (XAB2)
Spliceosome [BR:
bbuf03041
]
Complex B
Other components
Prp19-related factors
120986255 (XAB2)
Complex C
120986255 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_12
TPR_15
TPR_2
TPR_8
TPR_19
ARM_TT21
ARM_TT21_C
TPR_16
NRDE-2
CCDC84
Tcf25
TPR_1
Motif
Other DBs
NCBI-GeneID:
120986255
NCBI-ProteinID:
XP_040270668
LinkDB
All DBs
Position
1:complement(766386439..766426944)
Genome browser
AA seq
837 aa
AA seq
DB search
MPEKEISFEEDDLQFEEEILRNPYSVKCWMRYIESKGSAPAHTLNLIYERALKELPGSYK
LWYAYLKQRRKQVKRRCITDLAFEEVNNCHERALVFMHKMPRIWLDYCQFLVEQCKITRT
RRTFDRALRALPITQHYRVWPLYLRFVRAHPLPETAVRVYRRYLKLCPENAEEYIEYLRS
IDRLDEAASRLAGIVNHDDFVSKEGKSNYQLWQELCTLLCQNPGSVRSLDSAAIIRGGLT
RFTDQRGKLWCALAEYHTRSGHFEKARDVYEEAIQTVTTVRDFTQVFDSYAQFEESIIAA
KMETVSEMGKEEDDDLDLELRLARFEQLMERRPVLLNGVLLRQNPHNVHEWHKRVQLYQG
KPREIINTFTEAVQTVNPAKATGKPHTLWVAFAKFYEDNGQIDDARAILQRATQVQYTHV
DDLSAVWCQFGEMELRHENYEEALSILRKATAVPARKAEYFDASEPVQNRLYKSLKVWSM
LADLEESLGTFKSTKAVYDRIVDLRIATPQIIINYAFFLEEHNYFEESFKAYERGIALFR
WPNVYDIWSTYLSKFIARYGGKKLERARDLFEQALDGCPRKFAKNIFLLYAKLEEEHGLA
RHAMALYERATQAVEPGEQYEMFNIYIKRAAEIYGVTHTRSIYERAIEILQDDQAREMCL
RFADMECKLGEIDRGRAVYSYCSQMCDPRLTSGFWQTWRDFEVRHGNEDTLREMLRVKRS
VQAKYNTQGTFLVSQRLRAEGVGANEESKEVDEMQALEKRAAVVAAEAEKDKPQMKEKIL
FVRSDASRTELAELTLQNNPDEINIGDEDSEEDMEPDEVQLEQKSIPSSVFSGLADD
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgccggaaaaagaaatctcgtttgaagaagatgacttgcagtttgaggaggagatcctg
cggaatccatattctgtcaagtgctggatgagatatattgaatccaagggctccgcaccg
gctcatacccttaacctcatctatgagagggcacttaaggagcttccaggaagctacaag
ctgtggtacgcctatctaaagcagcgcaggaagcaggtgaagaggcgatgcatcactgat
ctggccttcgaggaggtgaataattgccatgagagagccctggtcttcatgcacaagatg
ccccggatttggctggattactgccagttcctcgtggagcagtgtaaaattacccgcact
aggagaacgtttgaccgggctcttcgcgctcttcccattacacagcactatcgagtctgg
cccctttacttacgctttgtccgtgcacaccccctaccagagactgcggtcagggtctac
aggaggtacttgaaactgtgtcctgagaatgcggaggagtacatagaatatctacgctct
attgacagactggatgaagcggcctccagactggcaggcattgtaaaccacgatgacttt
gtatcaaaggaaggaaaatctaattaccagttatggcaggagctgtgtaccctactgtgc
cagaacccaggatctgtccgctcccttgactcagcagccatcattcgaggtggcttgacg
cgctttacagatcagaggggaaagctgtggtgcgcccttgcagaatatcacacacgcagt
ggccattttgaaaaggctcgagatgtgtatgaggaggccattcagaccgtcaccactgta
cgtgacttcacccaagtcttcgacagctacgctcagtttgaagagagcatcattgctgct
aaaatggagactgtcagtgagatgggaaaagaagaggacgatgacctggacctggagctg
agattggctcgctttgagcagctgatggagcggagacctgttttactgaatggggtgtta
ctccgacagaacccacacaatgttcacgagtggcacaagagggtacagctctatcaaggc
aagccacgagagattattaacacattcacagaggctgtccagactgtgaatccagccaag
gcaactgggaaaccgcacacgttatgggtggcattcgccaagttctatgaggacaatggc
caaatcgatgacgctcgagcgatcctgcagagagcgacccaggtgcagtacacacatgtg
gatgacttgtccgctgtttggtgtcagtttggtgagatggagctgagacatgagaattat
gaggaggcgctgtctatattaaggaaagccacggcagtaccggcccgcaaggctgaatat
tttgatgcctctgagccggtgcagaacagactctacaaatccctgaaagtctggtccatg
ttggccgacctggaggaaagtttggggactttcaagtccacaaaggcggtatacgatcgc
attgtcgacctccgcatagccacgccacagatcatcatcaactacgctttcttcttggaa
gaacacaactattttgaagaaagttttaaggcctatgaacgtggtatcgcccttttccgc
tggcctaatgtctatgacatctggagcacttacctgtctaagttcattgctcggtatgga
gggaagaagctggagagagctcgggacctctttgaacaagccttggatggttgtcctcga
aagtttgcaaaaaatatattcctgctgtatgcaaaactggaggaagagcacggtctggcc
cgccacgccatggctctgtatgagcgagcgactcaggcagtggaaccaggagagcagtac
gagatgtttaacatttacattaagagagcggctgaaatctatggcgttacacacacccgc
agcatttatgagcgggccattgagattttgcaagatgaccaggcccgggagatgtgtcta
cgatttgctgacatggagtgtaaattaggagaaattgaccgtggccgagctgtgtattcc
tactgctctcaaatgtgcgatccccggttgacctcagggttttggcagacctggagagat
tttgaggtgcggcatggtaatgaggacacactgcgtgagatgctgcgggtcaagcgtagc
gtacaagccaagtacaacacacaggggacgttccttgtatctcaaaggttgagggccgaa
ggagtaggtgctaatgaggaaagcaaagaagtcgatgagatgcaggctctggagaagagg
gcagccgtggtggcagccgaggcagagaaggataaacctcagatgaaggagaagatcctc
tttgtcaggtctgacgcctcccgcacagagttagcagagctgacgcttcagaataatcca
gacgagatcaacataggagatgaggattcagaagaggatatggagcctgatgaggtgcag
ctggagcagaaatcgatcccttcatcggtcttctctggtctcgctgatgactga
DBGET
integrated database retrieval system
