Bufo bufo (common toad): 120989346
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Entry
120989346 CDS
T07950
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
bbuf
Bufo bufo (common toad)
Pathway
bbuf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120989346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbuf03021
]
120989346
03019 Messenger RNA biogenesis [BR:
bbuf03019
]
120989346
Transcription machinery [BR:
bbuf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120989346
Messenger RNA biogenesis [BR:
bbuf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
120989346
U7-dependent histone pre-mRNA processing factors
120989346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
YbaB_DNA_bd
Motif
Other DBs
NCBI-GeneID:
120989346
NCBI-ProteinID:
XP_040273328
LinkDB
All DBs
Position
2:430092494..430094839
Genome browser
AA seq
692 aa
AA seq
DB search
MSVKRKAESVIPAEESDQLLIRPLGAGQEVGRSCIIVEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDCVKV
SNISADEMLYTETDLDDSMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRG
GRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKQINVNNPFVFKHISNLKSMDHFDDIGPSIVMASPGMIQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALTPPH
VILVHGEQNEMARLKAALIREYEDNDEVDIEVHNPRNTEAVTLNFQGEKLAKVMGLLADK
KPGQGRRISGILVKKNFNYHILSPSDLSNYTDLAMSTVTQTQAIPYTGPFNLLSYQLQQL
TGEVEEIEVNEKDCVRVFKAITVVKEQGMVILEWVANPSNDMYADIVATVILELQSNPRI
QKAATHRVSKGVDMEAYKKRLEIMLQDMFGEECVTSNDDNTVTVTVDGKSAILSLETRTV
ECEEGLDEDESLRELVQLAAQRLYNALGPANL
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgaagaggaaagcggagagtgtgatcccggcggaggagagtgaccagctgctg
atcagaccgcttggtgctggtcaggaggtcggaagatcatgtattatcgtagaattcaaa
gggagaaagatcatgctggattgcggcattcacccggggctggaaggaatggatgccctt
ccatatattgatttgattgatcctgcagagattgatctccttctgataagtcacttccac
ttggatcactgcggggcactgccatggtttctgcagaagaccagctttaaaggcaggaca
tttatgacccatgccactaaggcaatctatcgatggctgctgtcagattgcgtcaaagtc
agtaacatctctgcggatgaaatgctgtacacagagactgacctagacgacagtatggac
aaaattgagactatcaatttccatgaagtgaaagaagtagcaggaatcaagttttggtgt
tatcacgctggacatgtcctgggggccgccatgtttatgatcgagattgccggtgtcaaa
ttgctgtacactggggatttctccagacaagaggacagacatctcatggcagcagaaatt
ccaaatattaagccagatatcctaatcattgagtcaacgtatggcacacacatacatgag
aagcgggaggagagggaggccagattctgtaacacagtacatgacatcgtgaacagggga
ggtagaggactcatcccggtgtttgctcttggacgagctcaagaacttctgttaatctta
gatgaatactggcagaaccaccccgagctacatgacatccccatctactacgcctcgtcg
ctggctaagaagtgtatggccgtctaccagacctatgtcaacgctatgaacgacaagatc
cgcaagcaaatcaacgtcaataacccgtttgtcttcaagcacatcagcaacctgaagagc
atggatcactttgacgacataggtcccagtatagtgatggcctctccgggtatgatacag
agcggtttatctagagagctgtttgagagctggtgtaccgataaaagaaacggtgtgatc
atcgctgggtactgtgtggagggaacgctagcaaagcacataatgtcggagcctgaggag
atcaccaccatgtctggccagaagctgcctctgaagatgtctgtggattacatttctttc
tctgcccacacagattaccagcaaaccagtgaatttatccgtgcactaacgccccctcat
gtgatactggtgcacggtgagcagaatgaaatggcgcgtcttaaagctgctctcatccgt
gaatatgaagacaatgacgaggtcgatattgaagttcacaaccccaggaacactgaagct
gttaccctaaacttccaaggagaaaaactggccaaggtaatgggtttgcttgctgataag
aagccgggacaaggtcgaagaatctcgggaatcctcgtcaaaaaaaacttcaactatcat
atcctttctccaagtgacctctccaattacactgatctggcgatgagcacggtgacacag
acacaggcgattccttacacaggccctttcaacctgttatcttaccagttacagcagctc
acaggagaagtagaagaaattgaggtgaatgaaaaggactgtgtgagggtcttcaaggca
atcacagtggtaaaggagcaaggaatggttatactggagtgggtggcaaatccctccaat
gatatgtatgccgacatcgtggccacagtgatcctggagctgcagtcaaatcctcgtata
cagaaagcggcgactcatagagtcagtaaaggagtggacatggaggcgtacaagaagaga
ctggagattatgcttcaggacatgtttggcgaggagtgcgtgaccagtaacgatgacaac
actgtcacagtcactgtggacggaaaatcagccatcttgtctttggaaactcggaccgtg
gaatgtgaggaagggttggatgaagatgaatccctgcgggaattggtgcagcttgcagct
caaagactatacaacgccctcggccctgccaacctttaa
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