Bufo bufo (common toad): 120989515
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Entry
120989515 CDS
T07950
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bbuf
Bufo bufo (common toad)
Pathway
bbuf03013
Nucleocytoplasmic transport
bbuf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120989515 (UPF1)
03015 mRNA surveillance pathway
120989515 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbuf03019
]
120989515 (UPF1)
Enzymes [BR:
bbuf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120989515 (UPF1)
5.6.2.5 RNA 5'-3' helicase
120989515 (UPF1)
Messenger RNA biogenesis [BR:
bbuf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120989515 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
120989515 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
120989515
NCBI-ProteinID:
XP_040273599
LinkDB
All DBs
Position
2:466170073..466289449
Genome browser
AA seq
1108 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQGQTQSQLDGQVNGPD
GILQNGTVDDGVGKTSQLLGELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVI
KVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQIRNMESMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGARFMTTAMYDAREAIIPGSVYDRSSQARPSNMYFQTHDQIGMISSGPSHVTAMNI
PIPFNLVMPPMPPPSYFGQANGPTAAHSYIDRISQGRGMTKGKSPRGGRQKQRGIGLQGM
SQGNMPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQ
IDVALSQDSTYQGERAYQLGGVTGLSQY
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagaccctcaccttcctggacacggaggag
gccgagcttctgggggccgacactcagggctcggagttcgagttcaccgacttcactctg
cccagccagactcaggggcagactcaaagccagcttgacgggcaggttaatggcccagat
ggtatactacagaatggcacagtggatgatggcgtggggaaaacaagtcagctgctgggt
gagctgaactttgaggaagatgaagaagacacatattatacaaaggatcttccggtgcat
gcctgcagctattgtggcattcatgatccagcttgtgtggtctactgcaacacaagtaaa
aaatggttctgcaatggacgtggtaacacctctggcagccacattgtgaatcatttggta
agagcaaagtgtaaagaggtcactctgcacaaggatggaccacttggcgagactgtgttg
gaatgctacaattgtggatgccgaaatgtgtttctcctgggattcattccagctaaggca
gattctgtcgttgtgcttctgtgcaggcaaccatgtgcaagtcagagcagtttgaaggac
attaactgggacagttcccagtggcagcctcttattcaggaccgttgcttcctctcctgg
ttggtgaagatcccttctgaacaagagcagctcagagctcgccaaatcactgctcagcaa
ataaacaaactggaagagttatggaaggaaaacccttctgccacattggaggatctggaa
aagcctggtgttgatgaggaacctcaacatgttctgcttcgttatgaagatgcttatcag
taccaaaatatatttgggcctcttgttaaacttgaagcggactatgacaaaaaactgaaa
gaatctcagacacaagataacataacagtgcgatgggaccttggcctcaacaagaagagg
attgcttacttcactttgcccaaaactgattctgatatgcgtttaatgcaaggagacgaa
atatgcttgagatacaaaggtgaccttgcacctttgtggaaaggaattggacatgtgatt
aaggtccctgacaactatggtgatgaaattgccatagagctgagaagcagcgtcggtgct
ccggtggaagttactcacaatttccaagtggattttgtatggaagtcaacatcatttgat
cggatgcagagtgcgttgaaaacttttgcagtagatgagacttcagtttctggttacatt
tatcacaaacttctgggtcatgaggtggaagatgtaattataaaatgtcagcttcccaag
aggttcactgcacagggacttccagatctcaaccattcacaggtttacgcagtgaagacc
gttcttcaacgacctctaagtctcattcaggggccgcctgggactggaaaaactgtaact
tctgcaacaattgtgtatcatcttgctagacaaggaaatggcccggtcttggtgtgtgct
ccaagcaatattgctgtagatcaactcactgagaaaatacaccaaacgggactcaaagtt
gttcgtctctgtgcaaagagccgtgaagccattgattctccagtttctttcttggcactg
cacaatcagatccgcaacatggaaagtatgccagaacttcagaaattgcagcaattgaaa
gatgagacaggagaactgtcatcggctgatgagaaacgatacagagctcttaaaagaaca
gcagaacgagaattacttatgaacgcggatgtaatttgctgtacatgtgttggtgcagga
gatcctaggcttgctaaaatgcaattccggtcgattttgattgatgaaagtactcaagcc
acagagcctgaatgtatggtgccagttgtgctgggagccaaacagctaatacttgtagga
gatcactgtcagcttggtccagttgtgatgtgtaaaaaagctgcaaaggctggactgtct
cagtcactgtttgagagacttgtggttcttggcatcagaccaattcgccttcaggttcag
tacaggatgcatcccgcccttagtgcttttccatcaaacattttctacgaaggttccctt
caaaacggagtaactgcagcggatcgtgtgaagaaaggctttgacttccagtggccacaa
ccagacaagccaatgtttttttacgtcacccagggacaagaagagattgccagttcaggg
acttcttatctaaacaggacagaagctgctaatgttgagaaaattactaccaaacttttg
aaggcaggcgccaaaccagaccagattggtataattactccatatgaagggcagaggtcc
tacttggttcagtacatgcagttcagtggctctttgcacactaagctataccaggaggtg
gaaattgccagtgtagatgcttttcaaggaagagagaaagattttattatcctttcttgt
gttcgtgcgaatgagcaccagggaataggttttttaaacgatccccgtcgcttgaatgtg
gcattgacgagagcacggtatggtgtaatcattgtgggcaacccaaaggcactttcaaag
caacccctgtggaaccaccttctaaattactacaaggaacaaaaagtccttgttgaagga
cctctcaacaatcttagagaaagtctcatgcaatttagcaaacctcgcaaacttgtaaat
accattaatcctggggcacgttttatgacaacagcgatgtatgatgcccgtgaagcaata
atccctggttctgtgtatgaccggagtagtcaagctcgaccttcaaacatgtactttcaa
actcatgatcagatcggcatgattagctctggacccagtcatgtaactgccatgaacatt
cctataccatttaatttggtcatgcctccaatgcctcctccaagttattttggacaggcc
aatggaccaactgcagctcattcatacattgaccgtatttcccaaggtcgtggaatgact
aaagggaaatcaccccgtggtggacgccagaaacagaggggcattgggcttcaaggcatg
agtcagggaaatatgccaaatagtcaggccagtcaagatgttgtatcccaaccattctct
caaggaccccttacccaaggatacatatccatgagccagccatcacaaatgagccagcca
gggctttctcaaccagaattatcacaggatagctaccttggtgatgaatttaagtctcag
attgatgttgcgttatcgcaggactccacttaccagggggagcgcgcctatcaacttgga
ggtgtgactgggctgtcacagtactag
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integrated database retrieval system
