Bufo bufo (common toad): 120992337
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Entry
120992337 CDS
T07950
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bbuf
Bufo bufo (common toad)
Pathway
bbuf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120992337 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbuf03019
]
120992337 (MTREX)
03041 Spliceosome [BR:
bbuf03041
]
120992337 (MTREX)
03009 Ribosome biogenesis [BR:
bbuf03009
]
120992337 (MTREX)
03016 Transfer RNA biogenesis [BR:
bbuf03016
]
120992337 (MTREX)
Enzymes [BR:
bbuf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120992337 (MTREX)
Messenger RNA biogenesis [BR:
bbuf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
120992337 (MTREX)
Spliceosome [BR:
bbuf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
120992337 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
120992337 (MTREX)
Ribosome biogenesis [BR:
bbuf03009
]
Eukaryotic type
Pre-60S particles
Helicases
120992337 (MTREX)
Transfer RNA biogenesis [BR:
bbuf03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
120992337 (MTREX)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Helicase_dom4_arc
DUF3379
Motif
Other DBs
NCBI-GeneID:
120992337
NCBI-ProteinID:
XP_040277189
LinkDB
All DBs
Position
2
Genome browser
AA seq
1029 aa
AA seq
DB search
MADAFGDELFSVFEEEAQTASNTAAQPGPAAKTGKKNVKTITGAAPAAKREAGSMEAPED
CIFGKKIKLEPSSSDDVNLADLMPRVKVQEVDTVEGCTHEVALPADDEYVPLRPRVGKAS
KEYPFILDAFQKEAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKA
LSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREMAWVIFDE
IHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRP
TPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGELAKGDQKGRKGGTKGPSN
VFKIVKMIMERNFQPVIIFSFSKKECEAYALQMSKLDFNSDDEKKMVEEVFNNAIDCLSD
EDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAMGINMPA
RTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDERGIVILMIDEKMSPTVGKQLLK
GSPDPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVAEKVKKLEEQYN
CIQIANEESVVTYYKIRQQLAKLTKEIEDYIHKPKYCLPFLQPGRLVKVKNEEDDFGWGV
VVNFSKKSNVKPNTGDLDPIYVVEVLLNCCKESLKNAATETAKPAKPDEKGEMQVVPVLL
HLLCAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDPGLKKV
IQKTEAFEHRMYSHPLNNDPNLESAYKQCEKKAQIAVDIRAARRELKKARTVLQMDELKC
RKRVLRRMGFASSADVIEMKGRVACEISSADELLLTEMMFNGLFNDLTSEQATALLSCFV
FQENSSEMPKLTEQLAGPLRQMQETARRIAKVSAEAKLEVDEESYLSAFRPNLMDVVYTW
ANGATFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRD
IVFAASLYL
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccttcggggacgagctgttcagtgtatttgaagaggaggcgcagacggca
agcaacacggccgcccaaccagggcctgcggccaagaccgggaagaagaatgtgaagacg
atcacaggagctgctcctgcagccaaaagagaggccggcagcatggaggctccagaggat
tgcatctttggaaagaagataaaacttgaaccttcatcatcggatgatgtcaacctggca
gacttgatgcccagggtaaaagtgcaagaagtggatacagttgagggctgcacccacgag
gttgctctccctgcagatgatgagtatgtaccactgaggccacgggtggggaaagcttca
aaggaatatccattcatattggatgcctttcagaaagaagctattctttgcatagataac
aatcagtctgtcctcgtgtccgctcatacgtcggctggaaaaacagtgtgcgcagaatat
gccatagccctcgctctccgtgaaaagcaaagagttatcttcaccagcccaattaaagct
ctgagtaatcagaaatacagggagatgtatgaggagtttcaagatgtcggtttaatgact
ggagacgtcacaatcaacccaacagcgtcctgcctggttatgaccactgagattttgcgc
agcatgttatacagaggctctgaggtgatgagagaaatggcctgggtcatttttgatgag
attcactacatgagagactctgagagaggagttgtctgggaagagacgatcatcctgctg
ccagacaacgttcactatgtttttctttccgcaaccattcccaatgcacgtcagtttgct
gaatggatctgccacctacacaaacagccttgccatgtcatctacacggactaccggcct
actccattacagcattacatcttcccagccggcggggacggactgcatcttgttgtcgat
gaaaatggtgacttcagggaagacaattttaacacagccatgcaggttctacgcgacgca
ggggagctggctaagggcgatcaaaaaggcagaaaaggaggaactaaaggtccctctaat
gtgttcaagattgtgaagatgatcatggagcgcaacttccagccggtcattattttcagc
ttcagcaagaaagaatgtgaggcttacgcccttcagatgtctaagctggacttcaactct
gatgatgagaaaaagatggtggaggaagttttcaataacgccatagattgtttgtctgat
gaggataagaagctcccacaggtggaacacgttctgcctcttctcaagagaggtatcgga
atccatcatggaggtctgctccccattctgaaggaaacaatcgagattctgttctctgaa
ggattactcaaggctttatttgccactgagacgtttgccatgggtataaacatgccggcc
aggactgtcttattcacaagtgctcggaaatttgacggcaaagactttcgctggatttct
tcaggggaatacatacagatgtctggacgtgccgggagacgtggcatggatgaaagagga
attgtaattctcatgattgatgagaaaatgagcccaactgttggaaaacagctgctgaag
gggtcaccggatcctcttaacagtgcattccacctcacatacaacatggtgctgaacctg
ctgcgtgtggaggaaattaaccccgagtacatgctggaaaagtccttctatcagttccaa
cattatagagccattcctggcgtagcagaaaaggtgaagaaattggaggaacagtataac
tgtattcagattgctaatgaggaaagcgtcgtcacctattacaaaattcgccagcagctt
gctaaactcaccaaagagatagaagattacatccacaagcccaagtattgcctcccgttt
ctgcagcccggaaggctggttaaggttaagaatgaagaagatgattttggatggggcgtg
gtggtcaacttctccaaaaagtcaaatgttaagccaaatactggagatctggatcctatt
tatgtggtagaagtgctgctgaactgctgtaaagagagcctgaaaaatgctgcaactgaa
acggcaaagccggcaaaaccagatgaaaagggagagatgcaggttgttccagttctgctt
cacttgctatgtgcgatcagcagtgtgcgtctatatatccccaaggatctcaggcccctt
gacaaccggcaaagcgtattaaaatccatacaggaggttcagaagcgcttccctgatggc
gtgcccttactggaccccatagatgatatgggtattaaagatcccggccttaaaaaagtc
attcagaaaactgaagcctttgaacacaggatgtattctcaccctctcaacaacgatccg
aatctggagtctgcatacaaacagtgcgagaagaaagcccagatcgcagtggatattcga
gcagccaggcgggaactgaagaaagctcgcacggtgttacagatggatgagctgaagtgc
aggaagcgcgtgctgagacgcatgggttttgcttcgtccgctgatgtcatagagatgaag
ggacgagtggcctgtgaaattagcagtgctgacgagctactactcacagaaatgatgttt
aacggactttttaatgacctgacgtcggaacaagcgacggccctgctcagctgcttcgtg
tttcaggagaattcaagcgaaatgcccaaactaacagaacaactagcaggacctctacga
caaatgcaggaaacggcccggaggatcgcaaaagtctcagcagaagccaagctggaagtc
gatgaggagtcctatttaagtgctttccgtccgaatctcatggatgttgtctacacgtgg
gccaatggggcaacgtttgctcagatttgtaaaatgacagatgtttttgaagggagcatc
attcgttgcatgagacgtctagaagaattattacgacagatgtgtcaggcggctaaagcc
atcggaaatacagaattggagaacaagtttgcagaaggaattacaaagatcaaaagggac
attgtgtttgctgccagtctttacctatag
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integrated database retrieval system
