Bufo bufo (common toad): 120994538
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Entry
120994538 CDS
T07950
Symbol
SCAF4
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
bbuf
Bufo bufo (common toad)
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbuf03021
]
120994538 (SCAF4)
03041 Spliceosome [BR:
bbuf03041
]
120994538 (SCAF4)
Transcription machinery [BR:
bbuf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120994538 (SCAF4)
Spliceosome [BR:
bbuf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
120994538 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
120994538
NCBI-ProteinID:
XP_040279121
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All DBs
Position
3:complement(47290763..47401755)
Genome browser
AA seq
1351 aa
AA seq
DB search
MDAVNAFNQELFALMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGFDKDVFGPRFIKNLTATFQCLYLCPTEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAADATPAELLADSSANEEGASPPPPTLPSDPPEEAPSSVPAVSVPQ
LPNPDAFAAVAQLFQSSQGQQLQQILQTFQQPPKPQSPVVDENVYAQVPTTAPQMNPMSH
QSERKTAFDKLLDRFDYDDEPEAADETKKEASSPSASPPQPPFQFPGEAMQPPPFLQMPN
MDQFQAVQPRMIGMPQEPLLSQNPVPPTGQMLGFGMFPPQTYPTMVPPVVSQASPQPFLP
ASFSAQQNDEQMAKESQPDVPMDVEEPSVQESKRHMTDRQKSASRSPKRRRSRSGSRSRR
SRHRRSRSRSRDRRRHSPKSRSQEKRDREKERERRMKGLPSIKSEAVSVCSTTLWVGQLD
KRTTQQDVGSLLEEFGPIESINMIPPRGCAYIVMVNRLDAYRALQKLSRGSFKVNQKAIK
IAWALNKGIKAEFKQYWDVEIGVTYIPWSKVKPEDLEALCEGGMLDNDTLCPDWKPIIKK
AESKDTSQNGATDSAQAENIPSVPPPISLLSVPIRQPMPAVPGPQPLPSVPPLSALPTVQ
GLQPSVTLPSIQGLPPPQGLPPPQGVPPLQGLPIPPSLPPLQGMPLPQGMHVPGFPGPIN
IPPPGFAPGVPPPPFMRPGFNPMQMPPGFLPPPGMPPPMTPPMTPPVSLPPPMSGLGIPT
SAAGACASTNDPDVSQGNTLSLGSGRENIDSDDDGKGFGPPPQGGPNNVPGPMNPHHGAS
QGEAPQGLQTGATPGPPQGPPGPPQGPPGPPQGPPGPPQGPPGPPQGPPGSHQGPPGSHQ
GPPGSHQGPPGPHQGPPGPHQGPPGPHQGPPGPHQGPPGPHQGPPGPHQGPPGPPQGPPN
SSYGPPQGPPQTTSGLSHGLSHGPPIQSQSLQSGPSQGPSTGTPPGPLIGLQSPSTGLLG
ARPGLIPLQRPPGVPTPHMQRFPGMPHRPMLPHLAHRGPPPGPGGYGMPPPHGMRGPYPP
QGHFGRQGGHGGPEEGRPFRNDRRGFNPDRHGFNVDRGDRHGFNPDRNERMRFNPEADDE
FNPEMDDGPEFNPEMDEGEAFTMDEEEEQGFKPDRPGFNPDRQNFRPDRPGFHPERQGFN
SERPGFHPERNDRQGFIPDRERFGRRSFGNRNEDEREHFGNRFDDRDHERPGRGRRPWGR
GSPDHDRQRETEERNRWPVGREREPRRVLLDFPDSGRKQILNENHDPLKGKAENPDKEKE
KAESKEQKPAEEKISKMSPSSEPAKKESGST
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtgaacgcattcaaccaggagctttttgcgctcatggatatgaagcctcca
atttctcgagcaaaaatgattcttataactaaagcagcaattaaagccatcaagctttac
aaacacgtggtccagattgtagaaaagttcattaaaaagtgtaaaccggaatataaagtg
ccagggttatatgtcattgactcaattgttcggcagtctcgccatcagtttggatttgac
aaagatgtatttggtccaagattcatcaagaacctaacagcaactttccagtgtttgtat
ctctgtccaacagaagataagagtaagattgttcgggtattaaacttgtggcaaaaaaat
ggagtatttaaaattgagatcattcaaccattactggatatggcagcggatgctacacct
gcagaattattggctgatagttctgctaatgaagaaggcgcttctccccctcctccaaca
ttgccttcagatcctccagaagaggcccctagctctgtacctgctgtgtctgttcctcag
ttacccaatccagatgcatttgctgctgtagctcagttgtttcaaagtagccaagggcaa
cagcttcagcagattctacagactttccagcagcccccaaaaccacagtctccagttgta
gatgaaaatgtttatgctcaggtaccaactactgctcctcaaatgaatccaatgtcacat
cagtctgagaggaaaactgcttttgacaagttacttgacagatttgattacgatgatgag
cctgaagcagctgatgagacaaagaaggaggcttcaagcccctctgcttcacctcctcag
ccacctttccagttccctggagaggctatgcagccccctccatttttgcaaatgccaaac
atggatcagtttcaagcagttcagccacggatgattggtatgccccaggagcctctactt
agtcaaaatcccgtcccaccaactggacaaatgcttggatttggaatgtttccacctcag
acttaccctaccatggttccacctgtagtttcccaggcatcacctcagccatttctccca
gcttctttttcagcacaacagaatgatgaacagatggcgaaagagtctcaaccggatgtt
cctatggatgtagaagaaccaagtgtccaagaatccaaacgacatatgacagatcgtcag
aagtctgcatcaagatcaccaaaaaggaggcgttccaggtccggttcacgttcacgccgt
tctagacatagacgctcgcgttctcgatctcgtgacagacgccgccactccccaaaatcg
cgttcccaagaaaagcgtgaccgtgaaaaggaacgggagcgtagaatgaagggacttccc
tctattaaatctgaggcagttagtgtttgtagtactacactatgggttggacagctggac
aaaagaactactcagcaagatgttggtagcctcttggaagaattcggacctattgaatca
atcaatatgatcccaccacgaggctgcgcttacattgttatggtaaacaggttggatgca
tatcgtgctttacagaaactgagcagaggaagtttcaaagttaaccaaaaggcgattaag
attgcatgggcattgaacaaaggaattaaagcagagtttaagcagtattgggatgttgaa
ataggggtcacgtacataccatggagtaaagtcaaacctgaggatcttgaggcactttgt
gaaggaggaatgttagacaatgatactctttgtccagactggaaacccattattaaaaag
gcagagagtaaagatacatctcaaaatggggcaactgacagtgcacaggctgaaaatatt
ccatctgtacctccacctatctctctgctgtctgtcccgattcggcaaccaatgccagca
gtgccaggtcctcagccattgccatctgtcccacccctttcagcattacctacagttcaa
ggtcttcaacctagtgtgactttaccttctattcaaggtttaccacctccacaaggtttg
cctccaccccaaggggttcctcccctgcaagggttacctattccaccatcattgccacca
ttacaaggaatgcctttgcctcaaggaatgcatgttccaggattcccagggcctataaac
atacctccccctgggtttgctccaggtgtccccccaccaccatttatgaggccaggattt
aatccaatgcagatgccaccagggtttttacctcctccggggatgccccctcccatgact
cctcctatgactcctcctgtatctcttcctccacccatgtctggattaggcataccaact
tctgcagcaggtgcttgtgcttcaacaaatgaccccgatgtgtcacaaggaaatactttg
tctcttggttctggaagagaaaatattgactctgatgatgatggaaaaggatttgggcca
cctccacaaggagggccaaataatgttcctgggccaatgaacccacatcatggtgcttcg
cagggcgaagctccccagggacttcagacaggtgctacaccaggcccacctcaaggtcct
cctggcccacctcaaggtcctcctggcccacctcaaggtcctcctggcccacctcaaggt
cctcctggcccacctcaaggtcctcctggctcacatcaaggtcctcctggctcacatcaa
ggtcctcctggctcacatcaaggtcctcctggcccacatcaaggtcctcctggcccacat
caaggtcctcctggcccacatcaaggtcctcctggcccacatcaaggtcctcctggccca
catcaaggtcctcctggcccacatcaaggtcctcctggcccacctcaagggcctccaaac
tcatcctatggtccacctcaaggccctccacagactacttcaggtttatcacatggacta
tcccacggtcctccaattcagtcccaatctcttcagtctggtccatcccagggtccctca
acaggaacaccaccagggcctttaattggattgcagagtccatcgactggtcttctagga
gcaagaccagggcttataccgctgcaaagaccacctggagtacccacccctcacatgcaa
agatttcctggaatgccacatagaccaatgctgcctcacttggcacacagaggtcctcct
cctgggccaggtggttatggaatgccaccaccacatgggatgagaggtccttatccacct
cagggccactttggaaggcagggaggacatgggggaccagaagaaggcaggccatttagg
aatgacaggcgtggatttaatcctgacagacatgggtttaatgttgatagaggtgatagg
catggatttaatcctgatagaaatgaaagaatgaggtttaatccagaggcagatgatgaa
tttaatcctgagatggatgacgggcctgagtttaatccagagatggatgagggcgaagca
ttcaccatggacgaggaagaggagcaaggattcaagccagacagaccagggttcaacccc
gataggcagaatttccgccctgacaggccaggttttcatcctgaacgacagggctttaat
tcagaaagaccaggcttccatccagagagaaatgatcgtcaaggatttattcctgataga
gagaggtttggtaggaggtcatttgggaaccgcaatgaggatgagcgagaacactttggt
aaccgatttgatgatcgggatcacgagcgaccagggcgtggtagaagaccctggggcagg
ggaagtcctgaccatgatagacagagggagactgaggagagaaataggtggccagtagga
cgagaaagggagcccagaagagtacttctggatttccctgacagtggtagaaagcaaatt
ttgaatgaaaaccatgatcctctaaagggtaaagctgaaaatccagataaagagaaagag
aaagctgaatctaaagagcaaaaacctgctgaggagaagatctctaaaatgtcaccatct
tctgagccagcaaaaaaggaatctggatctacataa
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