Bufo bufo (common toad): 120995704
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Entry
120995704 CDS
T07950
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A
KO
K14328
regulator of nonsense transcripts 3
Organism
bbuf
Bufo bufo (common toad)
Pathway
bbuf03013
Nucleocytoplasmic transport
bbuf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120995704 (UPF3A)
03015 mRNA surveillance pathway
120995704 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbuf03019
]
120995704 (UPF3A)
Messenger RNA biogenesis [BR:
bbuf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120995704 (UPF3A)
mRNA cycle factors
P-body specific factors
120995704 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
120995704
NCBI-ProteinID:
XP_040281012
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All DBs
Position
3:complement(446869441..446910253)
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AA seq
455 aa
AA seq
DB search
MRSERETPPAVLRGNRSSDGRDVERSGTATTVKERKATLSKVVIRRLPPSISKVQLEEQL
HPLPAYDYFEFCTADPSLYPHLFSRAYINFRNPDDIILFRDRFDGFIFIDSKGQEYPAVV
EFAPFQKISKKKLKKRDTKAGSIADDLEYKKFLENYCAEEEKICANPETLLGEIEAKTKE
LIARRTTPLLEFIKNRKLEKQRIREEKREERRRRELEKKRLREEEKRKRREEERRKRKEA
DKQKKLCEKEIRIKLLKKSEKGDEIISEKQKEKVDEIDHEDSKWEKSSGNNKARTFENFV
KELKETTQNDSDKEQRDIEKRYRDKDQDRQRYHRMDDGRKARNNYEFDKFLRRNEDDQKW
GKGFSQDRPKKGSHNNSYAADAVDKLGKEDKCDDMASKKERIRNKDRPAMQLYQPGARSR
ITTGFTNKYVEDPSYMKNDADNISGRSSEKSEDAG
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgaggagcgagcgggagacgccgccggccgtgctgaggggaaacaggagcagtgacggt
cgagatgtggaacggagcggaacggcgaccaccgtgaaagaacggaaggcgactctgagc
aaggtggtaatacgtcgtcttccgccaagcataagtaaagtgcaactggaggagcaactg
catccgttaccagcttatgattactttgaattctgcactgctgatcccagcctctaccca
catctcttctcaagagcctacattaactttagaaacccagacgacatcattctcttcaga
gaccgatttgatggatttatcttcattgacagcaaaggccaagagtatccagctgttgtt
gaatttgcaccctttcagaaaatttctaaaaagaaactgaagaaaagggacacaaaagct
ggaagcatagcagatgatttggaatacaagaaatttttggagaactactgtgcagaggag
gaaaaaatatgtgcaaatccagagaccctcttgggagaaattgaagcaaaaactaaggag
ctcattgctagaagaacaactccacttcttgaattcatcaaaaatcggaagttagagaaa
cagagaatacgggaagaaaagagggaagagaggaggaggcgggagctggaaaaaaagcga
ttgagagaggaagaaaaaagaaaaaggcgagaagaagaaaggcgtaaacggaaagaagca
gacaagcaaaagaagttgtgtgaaaaagaaatacggattaagctcctaaaaaaatctgaa
aagggagatgaaatcatcagtgagaaacaaaaggagaaagtggatgaaattgaccatgaa
gactctaaatgggaaaaatcatctgggaataataaagcgagaacatttgaaaactttgtg
aaggaacttaaggaaacgacacagaatgatagtgacaaggagcaaagagatattgaaaag
agatacagagataaagatcaagatcgacaaaggtatcatcgaatggatgatggcagaaaa
gcaagaaacaactatgagtttgacaagtttcttagaaggaatgaagatgaccagaaatgg
ggaaaaggattcagccaagatcggcccaagaaagggagccacaacaacagctatgcagcg
gatgctgtagacaaactgggtaaagaggacaagtgtgatgacatggcatccaaaaaggag
cgcataagaaataaggatcgcccggccatgcagctgtaccagccaggagctcgcagtcgc
ataactacaggatttacaaataaatatgtggaggatccgtcttacatgaagaatgatgca
gacaacatatctggaagaagctcagagaagagtgaagatgctggataa
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