Bufo bufo (common toad): 120995794
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Entry
120995794 CDS
T07950
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
bbuf
Bufo bufo (common toad)
Pathway
bbuf04382
Cornified envelope formation
bbuf04510
Focal adhesion
bbuf04512
ECM-receptor interaction
bbuf04518
Integrin signaling
bbuf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120995794 (COL4A1)
04518 Integrin signaling
120995794 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120995794 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120995794 (COL4A1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120995794 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bbuf04147
]
120995794 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
bbuf00536
]
120995794 (COL4A1)
Exosome [BR:
bbuf04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120995794 (COL4A1)
Glycosaminoglycan binding proteins [BR:
bbuf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120995794 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120995794
NCBI-ProteinID:
XP_040281159
LinkDB
All DBs
Position
3:467113345..467317474
Genome browser
AA seq
1672 aa
AA seq
DB search
MARTTSWRLLALLFLLQELLSCCQAAACNGCGTSKCDCSGVKGQKGERGLIGLPGIIGFP
GLQGPEGPPGPLGQKGDTGEPGLPGTKGNRGPPGSAGFPGNPGLPGIPGQDGPPGPSGIP
GCNGTKGERGPLGPPGLPGLLGYPGPPGLPGIKGDPGEVFGMQGLMVKGEKGLPGIIGLP
GTPGLPGFEGPVGPPGLTGRTGAPGPPGPPGPKGSMGLSPNGPPGEKGEPGPPGPPGQQG
PASHGKGAVWYRDKGEKGMQGEKGDQGNRGETGSSIKGEKGEPGKPGPRGKPGKDGERGE
NGQEGIPGRQGFDGIRGQDGQKGDKGDGGPPGPPGIVIHDGQQTVTGEKGDTGLPGYPGS
KGEKGGKGATGFQGNPGQPGISMNGPPGAPGLTGESGEKGEPGIPGSSLPGQKGREGLRG
PPGFPGPPGPIDPTQECIPGQSGESGAPGDPGQQGFAGERGQKGDKGDACPTCDTVPSPL
PGPTGPQGPPGTPGVPGQAGNKGDRGEPGYDGPPGSPGPHGVPGLMGRPGAKGSPGEVYF
EPQLKGNKGDPGFPGLQGPTGREGRSGRDGQPGQPGPKGVSGTVGAKGERGPPGDSGFPG
IPGQKGLQGHPASGVPGEPGERGEPGGPGISGPPGNLGSKGEPGKLTVVPGPPGPIGSAG
FPGLPGEQGDKGAPGFLGRPGIPGEKGEPGVEGKGLPGSPGEKGHQGMEGARGVDGIPGQ
PGREGLRGEQGTPGAKGEPGLGLPGPKGLIGHPGPPGAIGEKGNTGPTGVPGEQGFSGVP
GHSGAKGDTGPAGTPGLRGNPGVPGFGPQGEPGPQGLPGSPGVPGPIGAKGNQGYPGFPG
ADMPGPKGDKGTSGMPGIMGMPGESGIQGLPGKDGYPGLQGQKGDMGFMGVPGIQGQPGS
PGNPGLPGEKGDHGPPGFRGESGTGGSKGEKGETGLQGDPGTLPPMEHMKGEKGEHGERG
QTGIQGEKGTHGDLGSTGMPGKDGEQGMPGKPGSKGDKGIQGLPGGPGFPGQKGSMGEMG
VPGPSGPKGEHGIQGNSGLPGVTGIKGEKGIKGEEGVPGIGIPGPPGIKGDAGTDGLQGL
PGETGDKGDIGVPGMPGLQGEKGLPGLAGFPGNPGISGEKGTKGFPGRDGVPGSKGQPGE
HGIQGPAGSIGEKGEPGYDGVPGTPGEKGEPGSPGRAIPGYPGERGEKGGKGDAGFPGSP
GVHGFPGIKGDQGIPGNQGIQGPPGAAGLPGIAMEGPKGDRGQPGPPGFPGSPGPAGSPG
FPGPDGTKGERGDRGWPGPPGFQGVKGETGIQGLPGDAGFPGQTGHKGERGPSGVSGFPG
LKGTEGPMGEKGQGGDRGESGPKGSQGSPGPAGQFQIFKGDPGPPGLPGPSGPKGFPGFP
GHKGEQGPVGAVGLPGPSGVAGINGIPGQKGELGPIGPTGPRGYPGPPGQDGLPGPMGLP
GQASMAHGFLITRHSQTIEVPQCPFGTVPVYDGYSLLYVQGNERAHGQDLGAAGSCLRKF
STMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPVTGENIQPFISRCSVCEAPAMI
MAVHSQTIQIPPCPGGWISLWIGYSFVMQTSAGAEGSGQALASPGSCLEEFRSVPFIECH
GRGTCNYYANTYSFWLATIERSEMFKKPTPSTLKAGDLRTHVSRCQVCMRQT
NT seq
5019 nt
NT seq
+upstream
nt +downstream
nt
atggcaaggaccacgagctggaggctgctggcgctgctcttccttctacaggagctcctc
agctgctgccaggctgcggcatgtaatgggtgtggaactagcaaatgtgactgtagcgga
gtgaaaggacaaaagggtgaacgaggattaattggtctgcctggcattattgggtttcct
gggcttcaaggaccagagggaccccctggaccattggggcagaaaggtgacacaggtgaa
ccaggacttccaggcacaaaaggaaacagagggccccctggatctgctggatttccagga
aaccctggtctccctggcatacctggtcaagatggccctccaggcccatctggcattcca
ggctgcaatggtacaaagggtgaaagaggaccactgggtccacctggtcttccagggtta
ttaggttatccaggtcctccaggtttaccaggaattaagggagatcccggagaggtcttc
ggtatgcaaggattaatggtaaaaggagaaaaaggtttacctggaataattggtttacca
ggtacacctgggttgcctggttttgaaggcccagtaggtcctcctggtctaacaggacgt
actggagcacctggtccacctggtcctccgggaccaaagggatcaatggggctaagcccc
aatggaccaccgggtgaaaagggtgaaccaggaccacctgggcctccgggtcagcaaggc
ccagcatctcatggaaaaggtgcagtttggtaccgagataagggagaaaaaggcatgcaa
ggtgaaaaaggtgaccaaggtaataggggtgaaactggatccagtattaaaggtgaaaaa
ggagaacctggaaaaccaggtcccagaggtaaacctggaaaagatggtgaaaggggagaa
aatggacaggagggtatacctggtagacaaggatttgatggaattcgaggacaggatgga
cagaaaggtgataaaggtgacggtggaccaccaggacctccaggaatagtaatacatgat
ggccaacaaaccgttactggagaaaaaggagataccgggctccctggttatcctggtagc
aaaggagagaaaggtggcaaaggtgccactggattccaaggaaaccctggacaaccaggt
atatcaatgaatggaccacctggggcacctggattaacaggggaaagtggtgaaaagggt
gaacctggaattcctgggtcatccttacctggacagaaaggcagagaggggttgcgcgga
cctcctggtttcccaggccctccaggtccaatagacccaacacaggaatgcattccagga
cagtctggtgaatctggggcccctggagatccaggtcaacaaggcttcgctggggaaaga
ggtcaaaaaggtgacaaaggagatgcctgccctacatgtgacactgtcccatcaccacta
cccgggccaacagggcctcaaggtcctcctgggacaccaggtgttcctggacaagcagga
aacaagggagacaggggagaaccaggctatgatgggccacccgggtcacctggaccacac
ggtgttcctggccttatggggagacctggagcaaaaggatcacctggtgaagtttatttt
gaaccacaattgaaagggaataaaggagaccctggtttccctggactgcaaggtcctact
ggaagagagggaagatctggaagagatggtcagccaggacagccgggtcccaaaggagtt
tcgggaacagttggtgccaaaggtgagcgtggaccacctggagacagtggattccctggg
atacctggacagaaaggtttgcaaggtcatccagcatcaggtgtaccaggggaacctgga
gaaagaggagaacctggaggaccaggaatttcaggaccacctggcaacctaggaagtaag
ggtgaacctggaaaactaactgttgtacctggaccaccaggaccaataggaagtgcaggt
tttcctggattgcctggagaacaaggtgacaagggtgctcctggatttttaggaagacct
ggaattcctggagaaaagggcgagcctggtgttgaaggaaaaggacttcctgggtctcct
ggtgaaaaaggtcatcaaggtatggagggtgcacgaggagtggatggtatccctggtcag
ccaggccgtgagggtttacgcggtgaacaaggcacaccaggagcaaaaggtgagccaggt
ctgggccttccaggcccaaaaggattgattggacatccaggtcctcctggagccattgga
gaaaaaggaaacacagggccaacaggagtccctggagaacaaggcttttcaggagttcca
gggcattctggggcaaaaggtgacactggaccagctggaacacctggcttaagaggtaac
cctggtgtaccaggatttggcccacaaggggaacccgggcctcaaggactaccaggatct
ccaggagttccaggcccaataggagcaaagggaaaccaaggctatccaggttttcctggt
gctgacatgccaggaccaaagggagacaaaggcacatcaggcatgcctggcataatgggt
atgcctggggaatccgggattcaaggtctaccaggaaaagatggatatccaggtcttcaa
gggcaaaaaggagatatgggttttatgggagttccaggaattcaaggccaaccaggttca
ccaggaaatccaggcctaccaggagaaaagggtgaccatggtcctcctgggttccgtggc
gagtcaggaactggaggttcaaaaggtgaaaagggtgaaacaggtttgcaaggagaccca
ggaacacttccgcccatggaacacatgaagggtgaaaaaggagaacacggcgagagagga
caaactggaattcaaggagaaaaaggaacacatggtgatttgggctccactggaatgcct
ggaaaagatggggagcagggaatgccgggaaagccaggatcaaaaggagataaaggtatt
caaggattaccaggaggtccagggtttccgggacaaaaagggtccatgggagaaatgggt
gtgccagggcccagtggaccaaagggtgaacatggtattcagggcaattctggtcttcct
ggtgtaactggaatcaaaggtgaaaaaggaattaaaggtgaagaaggtgttccaggcatt
ggcataccaggacctccaggcataaagggtgatgctggaactgatggtcttcaaggttta
ccaggtgaaacgggagacaaaggtgacattggtgttcctggaatgcctgggttacaagga
gaaaaaggattaccaggccttgcagggttcccaggtaacccaggtatatctggagaaaaa
ggaacaaagggcttccctgggcgggatggtgttcctggatcaaaaggacaaccaggtgaa
catggaattcagggccccgctggctcaattggagaaaagggagaacctggctatgatggg
gtcccgggaacacctggtgagaagggtgaaccaggttcacctgggagagctattcctgga
tatcctggtgaacgtggtgagaaaggtggtaaaggtgatgctggattcccaggctcacct
ggagtccatggcttccctggcattaaaggagatcaaggaattcctggaaaccaaggcata
caaggaccacctggtgctgctggacttcctggaattgcaatggaaggaccaaaaggtgac
agggggcagcctggtcccccaggatttcctggttcgcctggacctgcgggtagccctggt
ttcccaggaccagatggaaccaaaggagagagaggtgacagaggctggcctggaccccct
ggttttcagggagtgaaaggggaaactggaattcagggtcttcctggagatgcaggtttt
ccaggtcaaacaggacacaaaggggaaagaggtccttcaggagtgtcaggatttccagga
ttgaaaggtacagaaggtcctatgggagagaaaggacaagggggagacagaggagaatct
ggtccaaaaggatcacaaggctctccagggcctgcaggtcaatttcagatattcaaagga
gaccctggccctcctggactgccaggtccctctggtccaaaaggttttcctggtttccca
ggtcataaaggagagcaaggcccagttggtgcagttggcttgcctggaccaagtggggtg
gcaggaataaatggtatcccagggcagaaaggagaattgggtcccattggcccaactggt
ccaagaggctatccaggtccacccggtcaagatggcttgcccggcccaatgggcttacct
ggtcaagcttccatggctcatggcttcctaataacaagacacagccaaacaattgaagtt
ccccagtgcccatttgggactgttccagtctatgatggctactctctgctctatgtacaa
ggaaatgaaagggcccatggacaagatcttggtgctgcaggaagctgtcttcgtaaattc
agcacaatgccttttctattctgcaatataaataatgtatgcaactttgcatcaaggaat
gattattcttactggttgtccactcctgaaccgatgccaatgagcatggctcctgtaact
ggggagaatatccagccttttatcagcaggtgcagtgtttgtgaggcccctgctatgata
atggcagttcatagtcaaacaattcagatacccccttgtccaggtggatggatttcattg
tggatcggatattcatttgtaatgcaaaccagtgctggtgcagaaggctcaggccaagca
ttggcatcaccagggtcttgtttagaagaattccgcagtgtgcctttcattgagtgccat
ggacgagggacctgcaactattatgccaatacttacagcttttggcttgctacaatagag
aggagtgaaatgttcaagaagcctactccgtcaactctcaaagctggagatctccgtaca
catgtcagccgctgtcaagtatgcatgagacagacttaa
DBGET
integrated database retrieval system
