Bufo bufo (common toad): 120995943
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Entry
120995943 CDS
T07950
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
bbuf
Bufo bufo (common toad)
Pathway
bbuf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120995943 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bbuf03041
]
120995943 (PRPF40B)
Spliceosome [BR:
bbuf03041
]
Complex A
U1 snRNP components
U1 related factors
120995943 (PRPF40B)
Complex B
120995943 (PRPF40B)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
WW_2
LUD_dom
Motif
Other DBs
NCBI-GeneID:
120995943
NCBI-ProteinID:
XP_040281411
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All DBs
Position
3:555346173..555446120
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AA seq
908 aa
AA seq
DB search
MSAPDSGTAPPGQTAPFPNAPPLMPPPFMPPPGLPPPFPPIGLPPIGQRPPAMPPIPHAM
LPPMIPPMAGPPLLSQLPSLVPPMMPTLMLPAITTSTTTQATAPGTEAVSSPVTQPAPTT
QKAAEDSSSSQDIPVKKSLWTEHKAPDGRTYYYNTETKQSSWEKPDDLKSKTELLLSQCC
WKEYKSDTGKPYYYNSQTKESRWTKPKDLEELEVLIKQEEDSRIDHESKSAASSPRSTAA
LSDTEMAPTEEVFVLPPSLPETANTTETETSQEDATVNQKELINSDSLLIEDSKVEPEKQ
FYHWSTKEEAKQLFKELLKDKGVPSNASWEQAMKMIINDPRYSALPKLSEKKQTFNAYKS
QREKEEKEETRLRAKEAKEKLQSFLEQHEKMTSTTRYRKAEQMFGEQEVWSVVPERDRKE
IYDDVLFFLAKKEKEQAKQLRKRNVQALKNILDNMSNVSFQTTWSEAQQYLMDNPMFAED
EELQNMDKEDALICFEEHIRALEKDETEEKEKSRLRERRQQRKNRESFQVFLDELHETGQ
LHSMSTWMELYPSVSTDTRFSNMLGQTGSTPLDLFKFYVEDLKARFHDEKKIIKDILKDR
NFSVEVNTTFEDFAHIISFDKRAATLDAGNIKLTFNSLLEKAEARERERGKEEARKFRRK
EAAFKSMLKQAAPPLEIDSNWDDVRERFVGDSAFDQITVESERIRLFKEFMLSIENECQH
HHFKGKKHSKKSKKHHRKHSQSPSPAEWGRKKVPDISTWDPTGAVEKTSETEEENHQHRS
QKRKKRNHSESGSDVSSSGDSEHSSRKSKRQKKKSKKKRHKSNSPESETEKEKERSKRER
DQDSEQTKERMKDRAQDQETESADSRLRLLKQASQKEKTGWDTSDSELSEGELEKRRRCL
LQQLDDDQ
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcaccagactctggaacagctccacctggtcagacagcccctttccccaatgct
cctcctctgatgcctccaccttttatgccaccccctggccttccacctccatttccacca
attggacttccaccaataggacagagaccaccagcaatgcccccaattccacatgcaatg
ttgccacctatgatcccacccatggcaggaccacctctcctctctcagctcccaagtctt
gtgccaccaatgatgccgactttgatgctgccagccataacgaccagcactactacacag
gcgactgctcctggaacagaagctgtgagctcacctgtgactcaaccagctccgaccaca
cagaaagctgcggaagacagctcatcctctcaagacattccagtaaagaagtctctatgg
actgagcacaaagctccagatgggcgtacctactactacaacactgaaaccaagcagtcc
tcctgggagaagccagatgatctaaaatccaaaacagagcttcttctctcacaatgttgc
tggaaggaatataaatccgacacaggaaaaccatattactacaactctcagacgaaggag
tcgcgctggaccaagccaaaagacctggaggaattggaggtgttgataaagcaagaggaa
gacagtagaattgatcatgaaagtaagtctgcagcctccagtcctcgctctactgcagct
ttgtctgacactgaaatggcacctactgaagaggtatttgtgctgccgcctagtttacca
gagacagctaacaccactgaaacagaaacgtcacaagaggatgccacagttaaccagaag
gagctgattaatagcgatagcctgctaatagaagatagcaaagtggaaccggagaaacag
ttttatcactggagcacaaaagaagaagctaaacaattatttaaagaacttctgaaggat
aagggtgttccttctaatgcatcttgggagcaagcaatgaaaatgattataaatgatcca
cgatatagtgcactgccaaaactgagtgaaaagaagcagacattcaatgcttacaagtct
cagcgtgaaaaagaagagaaggaggaaactagactcagggctaaggaggctaaagagaag
ctgcagagtttcttagagcagcacgaaaagatgacgtcaaccacacgatacaggaaagct
gagcaaatgtttggagaacaagaagtgtggtcagttgttccagaaagagatcgcaaagaa
atttacgatgatgtactcttctttcttgcaaaaaaagaaaaggaacaagcaaagcagctg
aggaaacgcaatgttcaagcactgaaaaatatcttggataatatgagcaatgttagtttc
caaacaacatggtcagaagctcagcagtacctaatggataatccaatgtttgctgaggat
gaagaactgcagaatatggataaagaagatgcacttatttgctttgaagagcatatccga
gctctggaaaaagacgaaactgaagaaaaggaaaaaagtcggcttcgtgaaaggcgccag
cagcgtaaaaatcgtgaatcttttcaggtgtttcttgatgagctgcatgaaacaggacag
ctacactccatgtctacttggatggagctgtacccgtcagtaagcactgacactcgcttt
tctaacatgctaggacagacaggctctaccccacttgatctgtttaagttttatgtggag
gatctgaaggctcgatttcatgatgagaaaaagatcataaaagatattctaaaggatcgg
aacttcagtgttgaggtgaatactacatttgaagactttgcacacattatcagttttgac
aagcgagcagcgacacttgatgcaggaaacatcaagttaacatttaatagtctgctggag
aaagcagaggctcgggaacgtgagcgcggaaaggaggaagctcgaaagtttcgaagaaag
gaagctgcatttaaaagcatgttgaagcaggcggctccacctctggaaatagacagcaac
tgggatgatgtgcgagagcgttttgttggcgacagtgcttttgaccagattacagtggaa
tcggaaaggatccgtctgttcaaagaatttatgctgtctattgagaatgaatgtcagcat
catcattttaagggcaagaaacactccaaaaaatccaaaaagcaccaccgcaagcattct
cagtcacccagcccagcagagtgggggaggaagaaggttccagacatctctacatgggat
cccactggagcagtggagaaaacatcagagacagaagaggaaaatcaccaacatcgctca
caaaaaagaaaaaaaagaaaccattcagagtcggggtctgacgtctcctcatcaggcgat
tcagaacatagctccaggaaatccaagagacagaaaaaaaagagtaagaaaaagagacac
aaatcgaacagtcctgagagtgaaacagagaaggaaaaagagaggagtaagagagagcga
gatcaagatagtgaacagacgaaagagagaatgaaagaccgagcccaagaccaagagaca
gagtctgcagacagccgcctcagattactaaaacaggcctcacagaaggagaaaacaggc
tgggacacatcagacagcgagctcagtgaaggagaactggagaagaggcgacgatgttta
ctgcagcagctggatgatgatcaatag
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