Bufo bufo (common toad): 120996471
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Entry
120996471 CDS
T07950
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bbuf
Bufo bufo (common toad)
Pathway
bbuf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120996471 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbuf03021
]
120996471 (PCF11)
03019 Messenger RNA biogenesis [BR:
bbuf03019
]
120996471 (PCF11)
Transcription machinery [BR:
bbuf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120996471 (PCF11)
Messenger RNA biogenesis [BR:
bbuf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
120996471 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
PCF11_RFEG_rpt
CID
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
VHS
DNA_pol3_a_NI
DUF6980
Motif
Other DBs
NCBI-GeneID:
120996471
NCBI-ProteinID:
XP_040282333
LinkDB
All DBs
Position
3:complement(676538681..676564586)
Genome browser
AA seq
1625 aa
AA seq
DB search
MAADEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVQFARDIVTLIEAQIAKAPST
EKLPVMYLMDSIVKNVGRDYLAAFAKNIVPTFVNVFEKVDENTRKSLFKLRATWDEIFPS
KKLYTLDLRVNQLDSAWPVKPLPPNVNSPSIHVNPKFLKPEEASTNAISAPKPAPRAPPV
HAEAQKPVQSQEQIIRQQLLMKQKQLLELQQKKLELELEHTKAQLASSTSSVPAKPQVVP
EVPRPPKASLLPTPTHKEKERVLAPPPPAEKPAVPTRDPRLNRGSQHSTPSKDQGSKKDV
KANLHPPESKPAKPVAIEKVSSSTRQEKSKTSDKLPKKEPTAHTEHKGKSKSPSPMKAKL
PHAKDSKSAVSDTKEPDASKRDPRLRKNFRDKTDEKPAEIKEKRRSTEKKEDHKSSEHRP
SGNRSKIANGLQKSEPSDADKQATKPSRAPGRKRSRSRSPKTRSPVLSPKRRERRSPPKR
RQRSLSPIPSLLKIGKVRPTGGKLPHSEEFPPSTRDERSKRIPKLDPRDNRRQKKSSEER
QQDPAAPTSMRSSLEPKENVENWQESKTSKRWRSGWEENKTSQGADHHQGNRTPHARHRD
NWPNKGILSPRTPKQQDWLSADADLQIPKELTRASKGELLKKANERLASGEISQDDFLVV
AHQIRQLFQYQEEKRRSSVWDSPTDDTKGGGRKPLLSSADLNYYQHKAKLRRTHVQHFME
EGFMDIDDIDFDGRESERDLIQGRLSPGIRPDSDDLVHDGLGRLDEQKDLSIGLREDQRQ
PYNEPYPHKRSRYNETEPNFVDDKALLGKDNLLVGLREERRPLLETPARLPVRGDGLGGK
GFEDPTNVLNARTESPAKSCTLFEGTSGQRDPLFKSELVDDPRFEKLSGQLVNQPMRFEE
QNLIITNPPVDSQRMDVLQGPLLGPQRFEGPQSRHMGAPMFDGTPGQPGAPLRFDGMQPS
RFEGGLGPQRFDNGSGPQNFDGNQRFDGPQRFEGPQRFDGGLGPQRFDGPPRPLLQQRFD
GPQCTPMRFEQPMRFDTVIGQPMGSMPFDGPHGPRFDTGPGPRFDGPPGPRFDGPSGPRF
DGPLGPRFDGPPGARFDPGPQALMRFDGPMGQNGPRFETPQLHRFENQSPHMSRYDVIPG
QPCQRFDGPPGHQTPPRFDGPMQMQPRFDGLMPQRFDGPNQQPRFDGPSVHPGPRFDNVN
PPVRQNVPPFGQNVPFDHQNMFPRQFQRPDQRFDMPQGPGFPVGPAAPGVQAFPNQLQRP
AGPYFDDKNPQGPGFGHFNMPVGNMQPNPQFQPMDGMGQPAPFTQEPLPSAQIPGVFTSN
QPGAAFPNPENHLGQLDVNELFSKLLSTGILKASQTENTSSQATEPSSQSTHEDEEDDPS
EDQDVPDITGFAMEDLKQRHESIITRLYTGIQCYSCGMRFTKSQTDIYADHLDWHYRQNR
TEKDVSRKITHRRWYYSLKDWIEFEEIADLEERAKSQFFEKVHEEVILKTQEAAKEKEFQ
SVQAGPAGADEICDICKEQFEQYWDEEEEEWHLKNAMRVNEKIFHPSCYEDYKNTSSFLD
CTPSPSKTLLENPLNAMLRLVKEEVADTSDTAVRVKEEPSADAATHCAQTIPLLTEVKPE
PDDPV
NT seq
4878 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgacgaagcccgagaggacgcctgtcgggattatcagtcctccctggaggac
ctgactttcaacagcaagcctcacatcaacatgctgaccatcctcgccgaggagaacgtc
cagttcgcccgggacatcgtcactcttatcgaagcgcaaatcgctaaggcgcctagcaca
gagaagcttccagtcatgtatctcatggattccattgttaaaaatgtcggaagagactat
cttgcagcgtttgctaaaaacatagttcccacgtttgttaatgtgtttgaaaaggtggat
gaaaacactagaaaaagtttatttaaattacgggccacatgggatgaaatatttccatcc
aaaaaactctatacacttgatttgcgggtcaatcaactggactcggcatggcccgttaaa
cctttaccgccaaatgtgaattcgcccagtatccatgtgaatcctaaatttcttaaacca
gaagaagcctctacaaatgccatctcagcaccaaaaccagcacctcgtgccccacctgtt
cacgctgaggcacagaagccggtgcaatcccaggagcagataatccggcagcaattgctg
atgaagcagaaacagttgttagagcttcaacaaaagaagttagaactggaattggagcac
acaaaggctcagctggcaagcagtacgagttcggtacctgcaaagccccaagttgtgcca
gaggttcctcgtcctccaaaggcttcgctgctgcctaccccgactcataaggaaaaggag
agggtgttggcgcctccaccgcctgctgaaaaacctgcagtgccaaccagagaccctcga
cttaacagagggagtcaacattctacaccttctaaggaccaagggtctaaaaaagacgtc
aaagcgaacctacatccaccagagtctaaacctgcgaaacctgtagctattgagaaagta
agctcctccacaagacaagaaaagagcaaaacgagtgacaaattgcccaaaaaggaaccc
acagcgcacacagaacataaaggtaaatccaagtccccttctcctatgaaagcaaagtta
cctcatgcaaaagactcaaagtccgcagtttctgatacaaaagaacctgacgcaagtaag
cgagatccaagactacgcaaaaactttcgagataaaacggatgagaaacctgcagaaata
aaggaaaaaaggcgaagtacagagaaaaaagaggatcacaaatcttcagagcatcgtccg
tctggaaaccggagcaagattgctaatggcttgcagaaaagtgaacccagtgacgctgat
aaacaagctacaaaaccaagcagagcccctggtcgaaagagatcacggtcacgctcccca
aagactcgatcgccagtgctgtcacccaagaggagagagaggcgatcgccacccaaaaga
agacaacgaagcctatcccctattccttcacttctaaagattggcaaggtgcgcccaact
ggtggcaaactgcctcattcggaagagtttccaccaagtacacgagatgagcgaagtaaa
agaatccctaaactagatccccgggacaacaggaggcagaagaagagctctgaggaaaga
cagcaggatcctgcagctccgacttctatgaggtccagcttggagccaaaggaaaatgtg
gagaactggcaagagtcaaaaaccagcaaaagatggaggtctggctgggaagaaaataaa
acctcacaaggcgctgatcaccatcaggggaacagaaccccacatgcaagacatcgagac
aactggcctaacaagggtatcctctcacctcggacgccaaagcaacaggactggctgagt
gcagatgccgatctacaaatccctaaggagttaacgagagcaagcaagggcgaattactt
aaaaaggcgaacgagcgtctggcatcaggcgaaatctcccaggatgacttcctggtcgtg
gctcatcaaattcgacaactctttcagtaccaagaagagaaacgcagatccagtgtttgg
gacagtcccacggacgacaccaaaggtggtggccgaaagccgctcctctctagtgcggac
ttgaattattaccagcataaagctaagctgagaagaacacatgttcagcatttcatggaa
gaagggttcatggatattgatgatatagattttgatggaagagaaagtgaacgtgatttg
atccaaggccgtctgtcaccaggaataagacctgacagtgatgatcttgtccatgatggt
ctcgggagacttgatgaacagaaagatctttctataggcttaagagaagaccagaggcag
ccatacaatgaaccatatccccacaaaagatccagatataatgaaactgagccgaatttt
gtagatgataaagcactccttgggaaggacaacctgcttgttggcctgcgtgaggagaga
agaccgttgcttgagaccccagcacgattacctgtcagaggagatggtcttggtggtaaa
ggattcgaagatcctaccaatgtgttgaatgcaagaacagaatctcctgcgaagtcctgc
acgctttttgaaggcacatcaggtcagcgtgaccccctttttaaaagcgaattagttgat
gacccaaggtttgaaaaattaagtgggcagctagttaaccaacccatgagatttgaagaa
cagaatctaattattactaatccaccagtcgacagccaaaggatggatgtcctacaaggt
ccacttttaggtccgcagaggtttgagggaccccagagtagacatatgggagctccaatg
tttgatggtactcctggtcaaccaggggcaccattgcgattcgatggcatgcagccatca
agatttgaaggcggcttaggtccacaaaggtttgataatggatccggaccacagaatttt
gatggcaatcaaagatttgacggtccacaaagatttgaagggcctcagagatttgatggt
ggattaggacctcaaagatttgatggccctcccagaccattactacaacagagatttgat
ggtccacaatgcacacctatgaggtttgagcaaccaatgcgatttgacacagtgattggg
caacctatgggttcaatgccctttgatgggccacatggtccaaggtttgacaccggtcca
ggacccaggtttgacgggcctcccggaccaagatttgacggaccttctggtcctaggttt
gatgggccactcggtccaagattcgacggccctccaggtgcaaggtttgatcctggtcct
caagctttgatgagatttgatggaccaatgggccagaatgggccaagatttgaaactcca
caattgcacagatttgaaaaccagtcgcctcacatgtcaagatatgatgttatcccaggg
cagccatgtcaaagatttgatggtccacctgggcaccagacaccaccaaggtttgatgga
ccaatgcaaatgcagccacggtttgatggactcatgcctcaacgatttgatggtccaaat
cagcagccacggtttgatgggccttctgtacaccctggaccacggtttgacaatgtaaat
ccacctgttaggcaaaatgttccaccctttggacagaatgtaccctttgatcatcaaaat
atgtttcctcggcaatttcaaagacccgatcagaggtttgatatgccgcagggcccaggg
ttccctgttggtccagcagcccctggagtgcaggcatttcctaaccaactgcaaaggcca
gctggaccttactttgatgataaaaatccacaaggacctggatttggacacttcaatatg
cctgtcggaaatatgcagccaaatccacagtttcagcctatggacggtatgggccagcca
gcacctttcacccaagaacctctgccctcagcacaaatacccggagtgttcacatccaac
cagccaggggctgcatttccaaatccagaaaaccacttgggtcagctggatgttaatgaa
ttgttttccaagctgctttccacgggaatacttaaagcatctcagacggaaaacacttcc
tctcaagcaactgaaccgtctagtcagtctactcatgaagacgaagaagacgacccttca
gaggatcaggatgttccagacatcactggctttgctatggaagatctgaaacagcgccat
gagagtataataacccgtttgtacactggcatccagtgctactcctgtgggatgaggttt
accaaatctcagactgatatctatgccgaccacttggattggcattaccgacaaaacaga
accgagaaggatgtcagcagaaaaataacccaccgcagatggtactacagcctgaaggat
tggatagaatttgaggaaattgcagatttggaagaaagagctaaaagtcagttctttgaa
aaagtacacgaggaggtgatattaaaaactcaggaggccgccaaggagaaggaatttcag
agcgtgcaagctgggcctgccggggcagatgagatctgcgacatttgcaaagagcagttt
gaacagtattgggatgaggaggaggaggagtggcatcttaagaacgccatgcgtgtcaat
gaaaagattttccatccctcttgttatgaagattataaaaatacgtcctcctttttagac
tgcacaccgtcccctagtaaaacgctcctagaaaacccactgaacgccatgttaaggctt
gtcaaagaggaggtggcagacacttccgacaccgcagtcagagtaaaggaggagccctct
gccgacgctgccacacactgtgcccaaaccatacccctgttaacggaggtcaaaccagaa
cccgacgatccggtttaa
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integrated database retrieval system
