Bufo bufo (common toad): 120997001
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Entry
120997001 CDS
T07950
Symbol
TRIM54
Name
(RefSeq) tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
bbuf
Bufo bufo (common toad)
Pathway
bbuf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120997001 (TRIM54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bbuf04121
]
120997001 (TRIM54)
Ubiquitin system [BR:
bbuf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
120997001 (TRIM54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
RING_XB3-XBAT31
zf-B_box
zf-RING_5
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_6
Sina_RING
UvrD_C
DNA_pol_phi
Aldedh
Zn_ribbon_FGT1_2
FlgN
Motif
Other DBs
NCBI-GeneID:
120997001
NCBI-ProteinID:
XP_040282839
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All DBs
Position
4:15329583..15406568
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AA seq
374 aa
AA seq
DB search
MNFAVGFKSLGGDTQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDIFQASNP
LWQSRGSSTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLNTKT
EQHLMCEEHEDEKINIYCLTCETPTCSMCKVFGAHKDCEVAPLSSIYKRQKSDISDGIAI
MVAGNDRIQAIITQMEEICKSVEDSSRRQKQLLSQRFDSLYNILEERKKELLQMITREQE
EKLQYVRGLIRQHGDHLEVTSKLVETAIQSMDEPQMAQFLQHAKELIKKITDMSKVSTID
RPDPGYENMDHFCVNVDLVSEMLRTIDFHPAAQGDEEEEIFDVDEVETEEERPVSTEDSG
PSRQKTATPQHGGV
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgccgtaggatttaagtctttggggggggacactcagactatggacaacctg
gagaagcaactgatctgccccatctgcttggagatgtttaccaagcctgtggtgatcctg
ccctgccagcataacctgtgccgcaagtgtgccaatgacatattccaggcttcaaatccc
ctctggcagtcccgcggttccagcactgtatcttcaggaggacgattccggtgcccttca
tgccgacatgaggttgtcctcgatagacatggagtgtacgggctgcaaaggaatctactg
gtggaaaatatcatagatatctacaagcaggagtctagtagacctcttaacaccaaaaca
gagcagcacttaatgtgtgaggagcacgaggatgagaagattaacatctactgcctgacg
tgtgagaccccgacctgctccatgtgtaaagtgtttggggcccacaaagactgtgaggtg
gccccactctcaagcatctacaagagacagaagagcgacatcagtgacggcatcgccata
atggtggccgggaatgaccgtatccaggcgatcattacacagatggaggagatctgcaaa
agcgtcgaagacagcagccgccggcagaagcagctcctcagtcagcgctttgactcctta
tacaacatcttggaggagaggaagaaggagcttctgcagatgatcacccgagagcaggag
gagaagctgcagtacgtcaggggtctgatccgccaacatggagaccacctggaggtcaca
tctaaactagtagagacagccatacagtctatggatgaaccacagatggcacagttcctg
cagcacgcaaaggaactgatcaagaagatcacagatatgtccaaggtttccacgatagac
cgtccagaccctggctatgagaacatggatcacttctgtgttaatgtggatcttgtgtcc
gagatgcttaggaccatcgatttccaccccgctgctcagggggatgaagaagaagagata
tttgatgtggacgaggtggaaactgaagaggagaggccggtatctacagaggactctggt
cccagcaggcagaagacagcgacccctcagcatggcggggtgtag
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