Bufo bufo (common toad): 120998641
Help
Entry
120998641 CDS
T07950
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
bbuf
Bufo bufo (common toad)
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbuf03021
]
120998641 (SCAF8)
03041 Spliceosome [BR:
bbuf03041
]
120998641 (SCAF8)
Transcription machinery [BR:
bbuf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120998641 (SCAF8)
Spliceosome [BR:
bbuf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
120998641 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
120998641
NCBI-ProteinID:
XP_040285322
LinkDB
All DBs
Position
4:complement(441447432..441685635)
Genome browser
AA seq
1324 aa
AA seq
DB search
MEAVKTFNSELYSLNDYKPPISKAKMTQITKSAIKAIKFYKHVVQGVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDLFAPRFSNNIINTFQNLYRCPADDKSKIVRVLNLWQKN
NVFRSEIIQPLLDMAAGIPPPVVTPVFPSTAAAVSNTPGTPATPVTPANVIQGIPDPWIA
QITNTDTIAAVAQILQSPQGQQLQQLVQSLHVQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAAAASNTLNPLEQSVSLSKKLIDRFDFGEENSQNEDSKKDGSQIPLVPDSVNNSLFHQ
LAEHLQQQNLEHLRHQFLEQQHTPKMTAQENQDMMSESENSATPSQDDSQQAFMEKEAQL
HTSLSIQQEDMDIEEMQDVTEEMFEKEEKKMIKDEKPRVRSKSRSRSPRKRRSRSRSGSR
KRKHRKRSRSRSRERKRKTSRSYSSERRAREREKERMKKGLPPIRSKTLSVCSTTLWVGQ
VDKKATQQDLTNVFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSGSCKIGSKI
IKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKLDDLDDFAEGGMIDQETVNSEWQAQR
IPEPVVVKEPVPVPTTTVQSPIVQKTSIITTQPEAYNPPVAMLQIPVTPTVPAVSLVPPA
FPISMAVPPPGFTALHPPPFMRASFNPSQPPPGYMPPPVPPPTIPPPSMGSAIPTALVPR
LPMSTDSIKEVSYGGMMLPMPSVVTTSVSTPSVFNTSLSTQADQEGKRVPPTESANERTA
ATSTQSTVVSSTGILGVQPQHITTSVPPLTMGGRIAAMPFLDIRPGLLHQPATARFALLT
PAMPPPPPPRSMLPPGLIDPTVHSLPFTQAEIFPRHTIPPRLNNDNALPQEEGIALQSSN
IRQERDQDYRFPPIESRETVGHSSGGEQKKEGMPLVASQENEGVSSAEDIDINIRHIEDD
HEPQDMAVVDPSEGQEKIVTGPILGQLSPEGAHKDEREDEMHSLESLRGPDHHSFENKLK
NVPDDHEVPIRPQLDPRQHFGSPPADLLLPFGRHPLEIRETFGRPPLEGRDHYGRPPPEG
RDHLGRPPVDGRDHYGRPILEGRNSFGRLPVDGREIFGRPPLDMRDHFGRPPSDIGRREH
FPPDKPWGHRGDFDERPHLSFTGFGGQKGFPDDRPSRHGNYRHEQRNAPGWNRGFESDGH
RDYDDRRRSWERHRDRDDRDFGFRREVNGNRFGRERQTSNWMPPQQQYFEYFPEATTTKE
KADEVSQVNGEKPETESQQQTLKNANEPELCEKETPDKKNEEKGAVEAEVKSQPVVESTE
TEGT
NT seq
3975 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagtcaaaacctttaacagcgagttatactcgctcaatgactacaagcctcca
atttccaaggccaaaatgacacagattacaaagtctgcaattaaagccataaagttctac
aagcatgttgttcagggcgttgagaaatttatccaaaagtgtaaacctgaatacaaagta
cctggactctatgttattgactccattgttcggcagtccagacatcagtttggacaagag
aaggatctttttgctcctcggtttagcaataacataataaacacttttcagaatttgtat
cgctgcccagcagatgacaagagcaaaattgtaagagtactgaacctgtggcagaagaat
aacgtgttcaggagtgaaattattcagccgcttttggatatggctgctggcattcctccc
cctgttgtcacgcctgtctttcccagtactgcagcagctgttagcaacacaccaggcacc
ccagcaacccctgttaccccagcaaatgtaattcaaggcatacctgatccatggattgct
cagataaccaatacagataccattgcagcagtggcacagattttacaaagcccccaggga
cagcagcttcagcagttggttcagtcgttgcatgtccagcaacagaagccacaaccctca
cttctacaagctctagatgctggcttagtggttcagttgcaagcccttacagctcagcta
acagcggcagctgctgcctcgaacacactcaacccactggagcaaagtgtatctctcagt
aagaagctgatagaccggtttgattttggggaggagaattcacagaatgaggactcaaaa
aaggatggttcacaaattccgcttgtaccagattctgtgaacaactcacttttccatcag
cttgcagaacatttacagcagcaaaatctagaacatctacgccaccaattcttggagcag
cagcatactccaaagatgacagctcaggaaaaccaggatatgatgtctgaatcagaaaat
tctgctaccccatcgcaggatgacagccagcaagcctttatggagaaagaggcacagctt
catacgtcgctatcaatacagcaagaggatatggatattgaagaaatgcaagatgtgaca
gaagagatgtttgaaaaggaagagaagaaaatgataaaagatgaaaaaccaagggttcgt
tccaaatcacgatctagatcacccagaaaaaggcgttctagatcccgttcaggatccagg
aagcgcaagcatcgaaaacgttctcgttcaaggtcaagggaaagaaaacgtaagacttcc
aggtcatactcaagtgagagaagagcacgagagcgagaaaaagaacgaatgaaaaaagga
ctgcctccgattcgatccaaaactctaagtgtgtgcagcacaaccttatgggtgggacag
gttgataaaaaggcgactcaacaagacctgaccaatgtttttgaagagtttggacaaatt
gaatctatcaatatgattcctccccgtggttgtgcatatgtctgcatggttcacaggcaa
gacgcataccgggctcttcagaagctgagttcgggctcttgtaagatcggatctaaaatt
attaagatcgcttgggcgttgaataaaggtgtgaagactgagtacaagcagttctgggat
gtggatcttggcgtcacatacataccatgggagaaagtaaagctggatgatttagatgac
tttgcagaaggaggaatgattgatcaggagactgttaatagtgaatggcaagcacagagg
atcccagagcctgttgtagtgaaggagcctgtccccgtccctactactacagtgcagagt
ccaattgttcaaaaaacctccataataacaacacagccagaggcatataacccacccgtc
gcaatgcttcagattcctgtgacaccaactgtccctgctgtaagcttggtaccgcctgcc
ttccccatctccatggctgtcccaccaccaggcttcaccgctcttcaccctcctcctttt
atgcgtgcaagttttaaccctagtcagccacctccaggctatatgcctccacctgttcca
ccacccactattcccccaccttctatgggctcagctattcctacagccttggttcctcga
ctgcccatgtctacagacagcattaaagaagtgtcgtatggtgggatgatgctgcctatg
ccatcagttgtaaccacttcagtatctacaccatctgtctttaatacttccttaagtacg
caagcagaccaggaaggaaaaagagtacctccaacagagagtgccaatgaaagaactgct
gcaacttcaacacaaagtacagttgttagcagtactgggatcttaggagtgcagccacaa
catattacaacatctgttcctcctttaactatgggtggaagaatagcagccatgcctttt
ttggatattcgtcctgggttacttcaccaaccagcaacagcaagatttgctttactaact
ccagcgatgcccccaccgccaccaccaaggagcatgcttcctccaggacttattgatcct
actgtacattctcttccattcacacaagcagagatttttccccgtcacactattccccct
agactaaataatgataatgctctgcctcaagaagaaggcatcgccctgcaaagcagcaac
attcgccaagaaagagatcaggactaccgcttccctcccatagaaagtcgtgagactgtg
ggtcactcttcaggaggtgaacagaaaaaagagggcatgccgttagttgctagccaggaa
aatgaaggtgtaagctctgcagaggacattgatattaatattagacatatagaggatgac
catgaaccacaggacatggcggttgttgatccaagtgagggtcaggagaaaattgttaca
ggacctattttaggacagttgtctccagaaggtgcacataaagacgaaagggaagatgaa
atgcattctcttgaaagtctaagaggtcctgaccatcattcttttgaaaacaagctaaaa
aatgttcctgatgatcatgaagtaccaataagaccacagttagatcccagacaacatttt
ggcagccccccagcagatttattactaccctttgggagacatcctcttgagattagagaa
acatttggcagaccaccactagagggtagagatcattatgggagaccacccccagagggt
agggatcaccttggcagacctcctgtggatggtagagatcactatggacgcccaatttta
gagggtagaaactcctttggacgtttaccagtggatggtagagagatctttggaaggcca
ccattagatatgcgggatcattttggaaggcctccttcagatattggtagaagggagcat
tttcccccagataaaccatggggccatagaggcgattttgatgaaagaccacacctgtct
ttcactggttttggtggccaaaagggctttcctgatgacagaccttctcgtcatggaaat
tatcggcatgagcagaggaatgcgccaggttggaacagaggatttgaatctgatggtcac
agggattatgatgaccgccgtcgttcttgggaaagacatagggatagggatgatcgagat
tttggtttccgcagagaagttaatggcaaccgatttggaagagagagacaaacaagcaac
tggatgccacctcagcagcaatattttgaatatttcccagaggctactaccaccaaggaa
aaagctgatgaggtgtctcaggttaatggtgaaaagccagagactgagagtcaacaacaa
actcttaaaaatgctaatgaacctgaactgtgtgaaaaggaaacccctgacaaaaagaat
gaagagaaaggtgccgtggaggctgaagtaaagagtcaaccagttgttgaaagcacagaa
actgaggggacataa
DBGET
integrated database retrieval system
