Bufo bufo (common toad): 120998847
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Entry
120998847 CDS
T07950
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
bbuf
Bufo bufo (common toad)
Pathway
bbuf03008
Ribosome biogenesis in eukaryotes
bbuf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120998847 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
120998847 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbuf03021
]
120998847 (XRN2)
03019 Messenger RNA biogenesis [BR:
bbuf03019
]
120998847 (XRN2)
03009 Ribosome biogenesis [BR:
bbuf03009
]
120998847 (XRN2)
03016 Transfer RNA biogenesis [BR:
bbuf03016
]
120998847 (XRN2)
Transcription machinery [BR:
bbuf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120998847 (XRN2)
Messenger RNA biogenesis [BR:
bbuf03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
120998847 (XRN2)
Ribosome biogenesis [BR:
bbuf03009
]
Eukaryotic type
Pre-60S particles
RNases
120998847 (XRN2)
Transfer RNA biogenesis [BR:
bbuf03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
120998847 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
120998847
NCBI-ProteinID:
XP_040285632
LinkDB
All DBs
Position
4:513354098..513439230
Genome browser
AA seq
931 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIVVHCVEEKPKECNGIKIPIDSSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELVDEKNRIREEVISRGGYLPPDEVKERFDSNCITPGTEFMDNLAKCLRYYVAD
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPHHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNQPRPCALCAQFGHELKECQGVAREKKGEHDEFAGSPPGSEQE
FIFIRLSVLREYLEKELTMASLPFPFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGFVNLERVQMIMLAVGEVEDSIFKKRKEDDENFKRRQKD
KKKRMKGGHHRPAFAPTGQFAPQALGRNMSTPNTIVNPRQAAFQMRMHDSNPGNTQSPAG
TKRKAEDSDSEPEPEDNIRLWEDGWKQRYYKNKFDVDVSDEKFRRKVVQSYVEGLCWVLR
YYYQGCASWKWFFPFHYAPFASDFENISELFKEFETNTKPFKPLEQLMGVFPAASGNFLP
VTWRRLMSDPESSIIDFYPDDFAIDLNGKKFAWQGVALLPFVDERRLRAALEEVYPDLTP
DEKRRNSLGGDHLFVGGNHPLNDFIHELYKSNTTEPTGMPPELCHGIQGMFETDDGAVLP
NLIVESPVPMLRSLTQNYAISIKFKDPEYDDGYVFKAVVLQGAKKPPVTLKPGDWEKGNR
NGRPWNPQLGFNRDRKPMHLDQSAFRTLGHAVPQTRGPPRGGGQYSSAPPPNAYNPVNAY
RMPNNRQQIPNLMPNPRAQNTWSNRPPLFNQPPQPQRNYGQMQNPHQSYPNQHGGPSNYY
QRQREDRNRPNYNQGRNYQMPPQQSGRYNWK
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgttcttcaggtggctcagccgcaagtacccgtccattgtcgtgcac
tgcgtggaggagaagcctaaagagtgcaatggcatcaagataccgattgattccagcaag
cctaacccaaacgaggtggagtttgacaacttgtatttggatatgaatggcatcatccat
ccatgtactcacccggaggacaaaccggcacctaaaaatgaagatgagatgatggtggcc
atcttcgagtacattgatagattgtttaatattgtgaggccgaggaggttgctctatatg
gctatagatggcgtggcacctcgagccaagatgaatcagcagcgctctaggcgttttagg
gcttcaaaagaaggtgtagaattggtggatgagaagaaccgtatccgggaggaagtgatc
tccagaggtggctaccttcctcctgacgaagtgaaagaaaggttcgacagtaactgtatc
actcctggcacggagtttatggacaacttggcaaagtgtcttcgttactatgttgcagat
cgtttaaataatgaccccggctggaaaaaccttacagtcattttatcggatgcaagtgcc
cctggagaaggtgaacataaaattatggattacatcagaagacaacgagcccagcctcat
catgaccctaacactcatcattgcttgtgtggtgctgacgctgacctcatcatgcttgga
ctagccactcatgaacccaactttaccatcatcagagaagagtttaagcctaaccaacca
aggccatgtgcattatgtgctcagtttgggcatgagctaaaagagtgccaaggagtagcc
cgtgagaaaaaaggagagcatgatgaatttgctggtagtcccccagggtctgaacaagag
tttatcttcattcgtcttagtgtgttacgtgagtatctggaaaaagagctgaccatggca
agcttgccttttccatttgactttgaaagaagtgtcgatgattgggtcttcatgtgcttt
tttgttggcaatgatttcttgccacatcttccctcccttgaaatcagggaaggtgcaatt
gacagacttgtaaacatttacaaaaatgttgtgcataagaccgggggctaccttactgag
agtgggtttgtgaacttggagagggtgcagatgatcatgctggctgttggagaagtcgaa
gatagcattttcaagaaacgaaaagaagacgatgagaactttaagaggagacaaaaggat
aagaaaaagcgaatgaaggggggacaccacaggccagcttttgctcccactggacagttt
gcccctcaggcactaggtcggaatatgtccacccctaacaccatcgtcaacccaagacaa
gctgcctttcaaatgagaatgcacgactctaatcctggaaacacccagtctcctgcagga
acaaagagaaaagccgaggacagtgacagtgagcccgagccagaagataatatcaggtta
tgggaagatggatggaagcaacgctactataaaaacaaatttgatgttgatgtctctgat
gaaaagtttcgacgcaaggttgtgcagtcctacgtggaaggtctttgttgggtgctccgc
tactattaccagggttgcgcttcttggaaatggttttttccatttcactacgctcctttt
gcttctgactttgaaaatatttcggaactctttaaagaatttgaaactaacaccaaacca
ttcaagccacttgaacagctgatgggagtatttcctgctgctagcggtaacttcctacct
gtcacatggagacgactcatgagcgatccagaatctagtataattgacttctatcctgat
gactttgccatcgatttaaatggaaaaaagtttgcctggcaaggtgttgctctgttgcca
tttgttgatgagcggcgtctaagagcggctttggaagaggtttaccctgacctcactcct
gatgaaaaaagaagaaatagtcttggcggcgatcatctctttgttgggggaaaccatccc
ctgaacgacttcatacatgagctatacaagagcaatactacagagccaactggaatgcca
ccagagctgtgccatggaattcagggaatgtttgaaactgacgatggcgccgtccttccc
aatctgattgtggagtctccggtgcctatgttgagaagtttaacacaaaattatgcaatt
agcatcaaatttaaagacccagaatatgacgatggttacgttttcaaagctgtggtatta
caaggtgcaaaaaaaccaccagttaccttaaaaccaggagattgggagaagggcaataga
aatggccggccttggaacccacagctgggtttcaatcgagacagaaagccaatgcatctt
gatcagtctgcttttagaacactaggccacgccgtaccacaaaccagaggaccaccaagg
gggggtggacagtacagcagtgcccctccaccaaatgcttacaatcctgtaaatgcgtac
agaatgcccaacaatcgccaacagattcccaatctaatgccaaacccaagagcacaaaac
acttggtcaaatcgtccacctctttttaatcagccaccacaaccacaaagaaattatggg
caaatgcagaatccgcatcagtcgtatccaaatcagcacggtggaccaagcaattactac
cagagacaaagagaggacaggaaccgaccgaattacaaccaagggagaaattaccaaatg
ccgccgcagcagtcgggaagatacaactggaaataa
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