Bufo bufo (common toad): 121001130
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Entry
121001130 CDS
T07950
Name
(RefSeq) collagen alpha-6(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
bbuf
Bufo bufo (common toad)
Pathway
bbuf04510
Focal adhesion
bbuf04512
ECM-receptor interaction
bbuf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121001130
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121001130
09142 Cell motility
04820 Cytoskeleton in muscle cells
121001130
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bbuf04147
]
121001130
00536 Glycosaminoglycan binding proteins [BR:
bbuf00536
]
121001130
Exosome [BR:
bbuf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121001130
Glycosaminoglycan binding proteins [BR:
bbuf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121001130
Hyaluronan
Extracellular matrix or blood plasma proteins
121001130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
vWA_SIBA-E
vWA-TerF-like
DUF1194
Rep3_N
Motif
Other DBs
NCBI-GeneID:
121001130
NCBI-ProteinID:
XP_040287993
LinkDB
All DBs
Position
5:201635972..201989790
Genome browser
AA seq
2028 aa
AA seq
DB search
MKSMFGLLVAVIWVQLSSTQITETKPSITSTYQKKINGSAVCDHGIATDLVLMVDISQHT
IRQNKDLKDFLINVLSDLKISDHCVHVGLVAFSDEAEVILPLSTGVNMSIVEKHILDLQP
SNEKIARIGRAINYTRGEVFGDSLASRKNQGIKQTTILVSHKSSTDSVTEAAYLLRREKN
RIFTVAVSEANDTQINQIASHPTRNYKIKVKTFSDLSKSTDILLKKIENAVERDTRSSPK
LTHETKLGCQKTDRTDIYLLIDGSGSIYPDEFTAMKSFLVDLIDMFEIGPQKVRLGAVQY
SDRSQLEIGIGKKYSKIQLKLETRNIRQLGGGTNTGAAINFTCELILDTANIREGNVPVY
FIVLTDGDSQDSVKEAAMILRENKVNMFAIGVKEANQTQLLEITGDPKRVHFVNNFDSLN
DIKILLAQQICSSKVCHKVQADVMFLVDSSGSISTDNFNKIKNFMKSLVNKTDIGPDNVQ
FGIVQFSNDNMEVLQLSKDRTKAIIWDAIDKMGHMAQGSYTGKALEFVSQYFTEIKGSRP
KVKKLLILITDKKAQDDVKLQSAALRNSGVSIISMGIFNANKAQLEEISGPTGQVHYAES
FETLKFEEQKLLADICKEDCPRIQQADIVFVIDTSSSITPDQAKIIQSFVISFVNKSDVA
PDKVQFGALKYADDPYKMFYLNRYRNKNDVITAIEGDKQSGINTYTAKALEFSKTFFTEK
QGSRQRRGVPQYLLIITDGESHDKHNLNEASKQLHDAGIIVNAIGVGEAQTEELKTMAGS
MGKWFFIKEFEGLKDIFVNISEVVCEKSACNKELDISFLIDGSGGIKQADFEKIQDFMVS
VVDDFDISLGKVHVGVAQYNDSFRTEFQLKTYLDKETLKLMIKNIPRMKTGNALTGNALK
HMDYALLSPASNSRINEKIQQILIVITDDNSQDEVAKPAEALRNKGIITYALGVGKVSKT
QLLQIAGRSERQFSVHNYDAIKSIKKRMVEDICVQRPAENCSLDFIVGFDISTSPSGASL
FHGQNLLGVRIANILNSMMNVRSVSCAPGAVPQISVAFYVPNAATPITPHFHTYSSDLAQ
ILQTISVQGPSYLTTSVLQSMWKTFQKGDAGKAKMILIFTDGLDENVEDIEQTAEDLRKL
GLNGLVTVALEGTKGYDDIKYIEFGRGFEYNNQLHIGMSDIEFRLARQMSHVNEKTCCCV
FCECIGLRGAPGTYGGRGRKGSTGLKGHQGYRGEQGMDGERGLPGSMGEHGDIGCPGTKG
PKGNRGLPGDKNEHGEHGLDGFNGEEGLSGPPGKKGEKGEIGDQGKSGIRGSKGYKGLEG
QKGAIGDPGERSTIFGPTGPKGELGMEGDPGLDGIPGQPGTVGSESLPGRRGVPGPPGIK
GDLGVPGAAGEQGFRGPQGQLGIQGIKGHEGKNGLDGLLGPIGSPGGVGDRGNSGIKGKK
GEPGDPGVKGNPGEVGNRGFMGEIGTNGVGARGRKGIKGSQGTQGFIGFKGQPGEPGVVG
ERGKNGEKGQSSFPDKGAVGDPGIPGGPGRRGQKGIQGQTEQSPCELIDFIRNTCPCCQG
KKPCPVYPTELVFALDMSSDVRLPVFKRMINMVTYLLTNVTIRGGNCPVGARVAVMSYNK
LTNYLVRFSDFQNKEKLLNAVNNISLEISSNSRDIGTCMRFVARNVFKRSLQGATVRRIA
VFFSNGRTDDPAALSTAAMEYNGLEIIPAVISFTPAPAIKRAFEIDDSGTFQLIEISAND
FKPQIQTFLTCTLCYDTCKPDVLCGESNSAPKIVPIDVGFLLDSSYNMNLDEYEAARSFI
SRLIDGLDIPNTGARVALVSSATPGSSPGNEQKPYLEFDFSTYSNAKIMKRHLQENNHHL
QNPPAFGNTFKWMLENIMSKTPDLKKNKAIIMILSGETSDWDKQTLREVSLEAKCKGFAL
FVLFIGRTYNNTELMELPSAPTEHHLLQLGEGHKPNFEYAARFTQAFLNSVKLSINKYPP
PELKSKCSSLNNSRKKRLVMKQLAPTNKSSGRPKNTSDSISGKLPAYI
NT seq
6087 nt
NT seq
+upstream
nt +downstream
nt
atgaaatctatgtttggtttacttgtggcggttatctgggtgcagctatcatctactcaa
attacagaaaccaaaccatctattacttctacataccaaaagaaaattaatggatcagca
gtgtgtgaccatggtatagcaacagatctggtgctaatggtggatatttctcaacataca
attcggcaaaacaaagacttgaaagatttcttaattaatgtcttatccgatctgaagata
agtgatcactgcgttcatgtgggcctggtggcattcagtgatgaagcagaagtcattctc
cccctcagtaccggagtcaacatgtctattgtggaaaagcatattttagaccttcaaccg
tcaaatgaaaagattgcaagaattggaagagcaataaattatactagaggtgaagtgttt
ggtgatagtctggcaagcagaaagaaccagggaataaaacagacaacaatcctggtcagt
cataagtcctctacagatagtgtaactgaggcagcctatttacttagacgagaaaaaaat
agaatttttaccgttgccgtttctgaagcaaatgatacccaaatcaaccaaattgcatcg
catccgactcgaaattataaaatcaaggtgaagacattttctgatctttcaaaaagcaca
gacattttattgaagaagattgagaatgctgttgaaagagatactcgttcttcgcctaaa
ctaacccatgagacaaaattaggatgtcagaaaacagaccgaactgatatttatctgctc
attgatggttctggaagtatttatcccgatgaatttacagccatgaagtcatttctggtg
gatctcatagatatgtttgaaattgggcctcagaaggttcgccttggggctgtacagtac
tctgaccgcagtcaactggagattggtattggaaaaaagtactctaaaatccagttgaaa
cttgagacaaggaacattaggcagctaggtggaggaaccaacacaggagcagcaataaat
ttcacttgtgaattaatattagatactgctaatatcagggaagggaatgtgcctgtgtat
tttatcgtacttacagatggagattctcaagatagtgtgaaggaggctgccatgatcctc
agagaaaacaaagtgaatatgtttgcaattggggttaaagaagccaaccaaactcagttg
ctggaaatcactggagatcccaaaagggtccattttgtaaataattttgattctctgaac
gacataaaaattttgctagcccagcaaatctgttctagtaaagtttgccataaagtgcaa
gctgatgtgatgttcctggttgacagttctggaagtataagcacagataattttaataaa
attaagaattttatgaaaagtctggttaacaagacagacattgggccggataacgtacag
ttcggtattgttcaattcagtaatgataacatggaggtgctacagctaagtaaggataga
accaaagctattatctgggatgctattgacaaaatgggacatatggcccagggttcatac
accgggaaagccttggaatttgtgtctcaatacttcacagaaatcaaaggctcaagaccc
aaggtgaaaaaactcctgatacttataacagataaaaaagcacaagatgatgtcaaacta
cagtcagcagctctgaggaatagtggagtaagcattatctctatgggcattttcaatgca
aataaagctcaactagaagaaataagtgggcctacaggacaagtacattatgcagagtct
tttgaaacattaaagtttgaagaacaaaaattgcttgctgacatctgtaaagaagattgt
ccacgaatacaacaggcagacattgtgtttgtgattgatacatcaagtagtatcacccct
gatcaagctaagataatacaatcctttgttatatcttttgtgaataaatcagatgttgca
ccagataaagttcaatttggagctcttaaatacgcagatgatccctataagatgttttac
ctaaatagatacaggaataaaaatgatgttattacagctattgaaggagataaacaatca
ggaataaacacatatactgctaaggccttggaattttcaaaaacattctttacagaaaaa
caaggcagccgtcaacgtagaggagtccctcagtatcttcttattataactgatggtgaa
tctcatgacaaacataacctcaatgaagcatcaaaacagctacatgatgctgggatcatt
gtaaatgccattggagtaggtgaagcccaaactgaagagctaaagacaatggcaggaagc
atgggcaaatggttctttattaaggagtttgagggattaaaggacatttttgtgaacata
tctgaagtcgtatgtgaaaaatcagcatgcaataaagaattagacataagttttctgatt
gatggttctggaggtatcaaacaagcagattttgaaaaaattcaagatttcatggtatct
gtcgttgacgattttgacattagtcttggcaaggttcatgtaggtgttgctcaatataat
gactcattcagaacagagtttcagctcaaaacatatctggacaaagaaactttaaagctc
atgattaaaaacatcccaagaatgaagactggaaatgccctcactggaaatgccctcaag
cacatggattatgccctattaagtccagcaagtaatagtcgtataaatgaaaagatccag
cagatattgatcgtcataacagatgacaactctcaagatgaagttgcaaagcctgcagaa
gctcttagaaataaaggcatcattacctatgctttgggagtgggaaaggtgtctaagact
cagcttctacagattgctggaagatcagagcgacaattttctgttcacaattatgatgca
ataaaaagcattaaaaagagaatggttgaagatatatgcgtccagcggcctgcggagaat
tgttctctcgattttatagttggttttgatatttcaacttctcccagtggtgccagttta
ttccatggtcaaaatctattgggagttcgtattgctaatatcttgaacagcatgatgaac
gtgagaagtgtaagctgtgcccctggagctgtacctcaaatcagtgtagccttttatgtt
ccaaatgcagcaacgcccattactccacacttccacacctatagttcagatttagctcag
atcctccaaaccatttctgtccaaggtccttcctatctcacaacatctgttcttcagtcc
atgtggaagacatttcaaaagggtgatgcaggaaaagcaaagatgatcctaatctttacg
gatggtctagatgaaaatgttgaagacattgaacaaacagcagaagatcttcgaaaacta
ggattaaatgggctagttactgttgctttggaaggaactaagggatacgatgacatcaaa
tatatagaatttggccgaggctttgaatataacaatcagttgcatattggcatgtcagat
atagaatttagacttgcccgacaaatgtcccatgtcaatgagaagacgtgttgttgcgta
ttttgtgagtgtattggacttaggggagctcctggaacgtatggcggtcgtggaaggaag
ggatcaactggattaaaaggacatcaaggctaccgcggtgaacaaggaatggatggcgaa
agaggattgcctggttcaatgggagagcatggtgacataggatgtcccggaaccaaaggc
cccaagggaaacagaggtcttcctggggacaagaatgagcatggagaacatgggcttgat
ggattcaatggagaggaggggttgtctggacctccagggaaaaagggcgaaaagggcgaa
ataggagatcaaggtaaatctggaataagaggatctaaaggatacaaaggccttgaaggg
cagaagggtgctataggtgatcctggagaaagaagcacaatttttggacccacaggtccc
aaaggagaattaggcatggagggtgatcccggactggacggaatacctggacaacctggc
acagttggaagtgaaagtcttcctggtagaagaggcgttcccggaccaccggggattaaa
ggggatcttggagtgccaggtgctgcaggagaacaaggatttaggggtcctcagggacag
ctaggaatccaaggcattaaaggacacgaaggaaaaaatggactagatggccttctgggt
ccaattggttctccaggcggagtaggagatcgtggaaattcaggaataaaagggaaaaag
ggtgaacccggagatcctggagtaaaaggaaaccctggggaagtgggaaacagaggattt
atgggtgaaattggtacaaatggtgttggagcacgtggaagaaaaggaataaagggatct
caaggaacccaaggatttattggttttaagggacagcctggagaacctggtgtggtagga
gaacgtggaaaaaatggtgaaaaaggacaaagttcctttccagataaaggtgcggtggga
gatccaggaataccaggtggccctggtcgcaggggacaaaaaggaattcaaggccaaact
gaacaatctccatgtgaacttattgactttatccgtaatacatgtccatgttgccaagga
aaaaaaccctgccctgtttatccaacagaattggtgttcgcactggacatgtcaagtgat
gtgaggctgccagtgttcaagcgaatgatcaatatggtcacatatcttctgaccaatgta
accattaggggaggtaactgtcctgttggggcaagagtggctgttatgtcctacaacaaa
cttactaattatctggtgaggttttctgacttccaaaataaagaaaaattgctgaatgca
gtgaataatatttctctggaaatttcgagcaatagtcgcgacattggaacttgcatgaga
tttgtagccaggaatgtcttcaagagatctctacaaggagccactgtaagaagaatcgca
gtattcttcagcaatggtcgtactgatgaccctgctgcactcagcacagccgccatggaa
tacaacggtcttgagatcatacctgcagttatatcattcactccagcacctgcaatcaaa
cgagcctttgaaatcgatgactctgggacatttcagttgattgagatttctgcaaatgat
tttaaaccacaaatacaaaccttccttacatgcaccctttgttatgacacatgtaaaccg
gatgtattgtgtggagaaagtaattctgcaccgaaaattgtacctatagatgtaggtttt
ctcctggacagttcttacaatatgaaccttgatgaatatgaagcagcaagaagtttcatc
agtagattgattgatgggcttgatattccaaacactggtgctcgagtggctttggttagt
agtgcgacccctggctctagccctggcaatgaacagaaaccttatcttgagtttgatttt
tcaacatatagtaatgcaaagattatgaagagacacctccaggaaaacaatcatcaccta
caaaatccacctgcctttggaaatacattcaaatggatgcttgaaaacatcatgtctaaa
acaccagacctaaagaaaaataaggccattatcatgatattgtctggagagacaagcgac
tgggataaacaaaccttgagggaagtttctttggaagccaagtgtaaaggttttgctctg
tttgtacttttcattggcagaacatataataatactgaactgatggaacttccaagtgct
cccacagaacatcacctgctccaacttggtgaaggccacaaaccaaattttgaatatgct
gccagatttacccaggcatttctgaattccgttaaattatccataaacaaatatccaccg
ccagagctgaaatctaaatgttccagtttaaataatagcagaaaaaagagattggtcatg
aaacagttagcccccaccaacaagtctagtgggaggcccaaaaatacaagtgacagcatt
tctggaaagctacctgcttacatctaa
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