KEGG   Bufo bufo (common toad): 121001203
Entry
121001203         CDS       T07950                                 
Symbol
VPS41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
bbuf  Bufo bufo (common toad)
Pathway
bbuf04140  Autophagy - animal
bbuf04142  Lysosome biogenesis
bbuf04148  Efferocytosis
bbuf05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:bbuf00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    121001203 (VPS41)
   04140 Autophagy - animal
    121001203 (VPS41)
   04148 Efferocytosis
    121001203 (VPS41)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    121001203 (VPS41)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:bbuf04131]
    121001203 (VPS41)
Membrane trafficking [BR:bbuf04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    121001203 (VPS41)
SSDB
Motif
Pfam: TPR_Vps41 Beta-prop_Vps41 zf-RING_Vps41 Clathrin VPS18_solenoid_2nd zf_RING_Vps8_fungal WD40_Prp19 WD40_CDC20-Fz Beta-prop_HPS5 zf-RING_2 Vps39_1 Beta-prop_THOC3 zf_RING_Vps8 WD40_WDHD1_1st zf-RING_11 Beta-prop_WDR3_1st Beta-prop_RIG_2nd Beta-prop_EML_2 TPR_YpiA Beta-prop_IFT122_1st zf-RING_5 Beta-prop_WDR35_2nd zf-rbx1 zf-C3H2C3
Other DBs
NCBI-GeneID: 121001203
NCBI-ProteinID: XP_040288101
LinkDB
Position
5:complement(233600111..233921156)
AA seq 877 aa
MDGPWLSCDWALPVMADTQGLAGSPDQETMSHEESTEESEEDDSEEEPKLKYERLSNGVS
DILQEDAASCMTVHEKFLAMGTHSGKVYLLDICGNMTQRFDISTVKINQISLDESGEHVG
VCAEDGKVQVFGLYSREGLHEIFDCPIKIVAVHPQFGKSACKQFVTGGKKLILYERTWLN
RWKTTVLHEGEGTITNIKWRGNLIAWSNNMGVKILDIITRQRITNVPRDDTSLRPDMYPC
SLFWKDHLTLVIGWGKSVKICSVKERHAGEIRDLPNRYVEIVSQFDTEFFISGIAPLCDQ
FVMLFFVKETSDNASKELCARPRLDIIQPQADSCEEVSSDAITVRGFQENECRDYRLWVR
KSEALFLYVYFLSPRDVVVAKERDQDDHIDWLLGRKKYEEALMAAEISQKNIKRHEVLDI
GLAYITHLVEKGDYDMAARKCQKILGKNMKLWEDEVYRFKKIGQLKAISKYLPRGDLRLR
PAIYEMILDEFLRTDYEGFSTLIREWPGDLYNNKTIVKALKTHLNRDPSNRTLLKALAEL
HTYDQCYSQALEIYLTLQHKEVFDLIHKHNLFSSIKDKIVLLMDFDTEKAVDMLLDNEDK
ISIDKVIEELKNRPELQHVYLHKLFKRDHHKGQKYHEKQISLYAEYDRPNLLPFLRDSTH
CPLEKALEICQQRNFVGETVFLLSRMGNSRRALQMIMEELRDVDKAIEFAKEQDDAELWE
DLILYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLR
EGCKKILVSDSLALLKKMHRTQSRAMLVDEDNICEVCLSSILPTDSSKPLGVVVFHCRHM
FHRECLPIGNTMSPAYFCNICSAKHRGPGSAILDMKK
NT seq 2634 nt   +upstreamnt  +downstreamnt
atggacgggccctggctgtcatgtgactgggctcttcctgtcatggctgacacgcaggga
ctggctggctctccagatcaggaaacaatgtctcatgaggaatccacagaagaatccgag
gaggatgatagtgaagaagagccaaagctgaaatatgaaaggctgtccaatggagtgagt
gacatcttacaagaagatgcagcaagctgtatgaccgtccatgagaagttcttggccatg
gggacgcacagtgggaaggtctatttacttgacatctgcggcaacatgacacagaggttt
gatattagcactgtgaagatcaatcagatcagcctggatgaaagtggggagcatgtaggc
gtctgtgcagaggatggcaaggtgcaggtgtttggactttattcacgagaaggattacat
gaaatatttgactgtccgataaagatcgttgctgttcatcctcagtttggaaaatctgcc
tgtaagcaatttgtgactggaggaaaaaagctgatcttatatgagagaacctggctgaac
cgatggaagacaactgttttacatgaaggagaaggaacgataaccaatattaaatggcgg
ggaaatcttattgcatggtccaataatatgggagtcaaaatactagacataattacaaga
caaaggattacgaacgtacccagagatgacacgagcctacgtcccgacatgtacccctgc
agcctcttctggaaggatcatctgactcttgtcattggatgggggaaatctgtcaagatc
tgttctgtgaaggagcgacacgccggtgaaataagagacttgcccaaccgttatgttgag
attgtgtcacagtttgatacagaattcttcattagtggaatagcgcctctctgtgaccag
tttgtgatgctgttttttgtaaaggaaacttctgataatgcgagtaaagagctgtgtgcc
aggcctcgactggatatcattcagcctcaggcggattcctgtgaagaggtgtcctcggat
gctataacagtcaggggctttcaagagaatgagtgtcgggattatcgtctttgggtaaga
aaatctgaggcactttttctgtatgtgtactttttgtccccaagagatgttgttgtggcc
aaagagcgggaccaagatgaccacattgactggctattgggacgaaagaaatatgaggaa
gctctcatggctgcagagattagtcagaagaacattaagagacacgaggttttggatatt
ggcttagcgtatataacacatctcgtggagaagggggattacgacatggctgccagaaag
tgtcagaaaatacttggcaaaaacatgaagctgtgggaagatgaagtgtaccgcttcaag
aaaataggacaactgaaggcaatcagcaagtatctaccaaggggagatttacgcctaaga
ccggcaatatatgaaatgatactggacgagtttttgagaacggattatgagggattctca
accctaatccgagagtggcctggagacctgtacaataacaaaactatagtcaaggcttta
aagactcatctaaaccgtgacccaagtaaccgaacgctcctgaaggctctggcagaacta
cacacgtacgatcagtgttacagtcaagctttggaaatttacttaacccttcaacacaag
gaggtatttgatctgattcacaagcataacctcttcagctctatcaaggacaaaatagtt
ttgctcatggattttgatacagagaaagctgtggatatgcttttggacaatgaagacaaa
atctctattgataaagttatcgaagagttaaaaaatagaccggaactacaacatgtgtat
cttcacaaacttttcaagagagatcatcacaaaggtcaaaaataccatgaaaagcaaatc
agcttgtatgcagaatacgatcgaccgaatcttctgccttttcttcgagacagcactcat
tgcccgttggaaaaggcccttgagatctgtcagcagagaaactttgtgggagagacagta
tttctgttaagtcgcatgggtaacagtcgaagggcactgcagatgatcatggaggaactt
agagatgtagataaagccattgagtttgcgaaggagcaggatgatgcagagctgtgggag
gaccttattctgtactccattgacaaaccaccatttataactggactgctgaataacatt
gggacccatgttgatccgatccttctgattcaccggattaaagagggaatggagattcct
aatttgagagattcgcttgttaaaatcctacaagactataacctccagatactgctaagg
gaaggttgcaaaaagatcttggtgtcagactcactggcattgttgaagaaaatgcacagg
actcagtccagggctatgctggttgatgaggacaatatttgtgaagtttgcttgtcgtcg
atacttccaacagattcttcaaagcctcttggcgtggtggtatttcactgcaggcacatg
ttccacagagagtgtctgcctattggcaacacaatgtccccagcttatttctgtaacatc
tgcagtgccaaacaccgtggtcctgggagtgccatcttagacatgaaaaaatag

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