Bufo bufo (common toad): 121002865
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Entry
121002865 CDS
T07950
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
bbuf
Bufo bufo (common toad)
Pathway
bbuf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121002865 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbuf03032
]
121002865 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
bbuf03400
]
121002865 (TOPBP1)
DNA replication proteins [BR:
bbuf03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
121002865 (TOPBP1)
DNA repair and recombination proteins [BR:
bbuf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
121002865 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
BRCT_TopB1_SLF1
LIG3_BRCT
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
121002865
NCBI-ProteinID:
XP_040290428
LinkDB
All DBs
Position
5:205260226..205578524
Genome browser
AA seq
1513 aa
AA seq
DB search
MAKGDNDPFFVKFVKTPDNTDFFYEAHQEIKAFQSDEYLHLIDEKEAVSLKEKDKSLYIC
DPFSGPVFNHLKKLGCRIVGPPVVIFCMKHQRCVPRAEYPVFNMAMADITISCTSLDKET
REEVHQYVQLMGGCVYKDLNVSVSHLIAGEVGSKKYLVAASLKKPILLPSWVKALWERSQ
QRIISHTDVDMEEYLCPIFLGCTICVTGLSSLDRKEVQRLSSLHGGQYTGQLKMNESTHL
IVHEAKGQKYECARKWNVHCVSIQWFFDSIERGFCQDESMYTMEPMLSTKTMPETSTPTS
STNKLDNRALSDVSHISNISINSCVNESAFNSVMNTRLEPPPDTLENLDISSLQAPEDLL
DGCRIYVCGFGGRKLDKLRRLINSGGGVRFNQLTGDVTHVIIGENDEELKKFLNKTNHRP
YILSVKWLLDSFSKGTLQPEETYFHSSYKPAEIQAPAQPVLSSSMQKTSSKVPVKTDNLA
QNHQADEDLLSQYTENDITLLGPKSHETSNLNYLSNSSVQGDMSSYSSQIGFGETSTIIE
GGLFSKKRFLVLGFVEEDEACIIDIIKKNAGKVLSAQKRIIAQYAVVPLLGCEVEATVEE
VVTNAWLGMCIEQEKLLDPQSNSLFTPVVYVEGSAPLKDCVLSVSQFMGAERDSLVYLAG
LLGAKVQEFFVRKANPKKGMFASTHLVLREPEGSKYEAAKKWNLPAVTMAWLLQCAKTGK
KADESRFLVENACENDKEESFVSQTYRPTIARPTLDTPDRQVNCPEALKKAAVTPLDMNR
FQSKAFQSVLSRHNRNVPTPSGENKLPAREPSLHLDTPSKFLCKDKLFKPSFDVKDALAA
LDTPGGPIQKHRAQNTPLSEVIGRNLQLALANSNRQTAALTASPQLKTTEPKEVNQEPKI
LTDVVICVSKKLSKRQGDLNGIAASLGAEYRWCFDEGVTHFIYQGKQSDTNREFRSVKDR
AGIHIVSEHWLLSCAEEQKKVPESLYPYTYNPKMSLDISATQDGAHSSSKLSTAVSKHDE
NNGLTDDDDQIAEISPLKTNNTGNAQNEGSEVKGALTQTLEMRENFQRQLQELMSATSMV
KAQGQRTSLSRAGFDNSPSTPEGVRSSRNGRSWVLEARRNTRQPTADLNTEPSQNEQIIW
DDPTAREERAKLASNLQWPNSSSQYMEPPQPNIKTQNDDQAQFKESLTDTELADMEACEM
DNTAAEVFRKGKDFQSPAKEDQIIPTPRAPSIAFPLAKPMVAPQPKEMNEGPVMEERDKE
RRFQLSSLNPQERIDYCQLIEELGGIVIDKQCFDPSCTHIIVGHPLRNEKYLASMAAGKW
VLHRSYLEACRATKHFIKEDDYEWGSTSVLNAVSAINPQQRMLAEAAMRWRKKIQRIKQD
TGSVEGAFSGWRVILNVDQAKEAGFKRLLQSGGAKVFAGHSSSLFKEATHLFADFSKLKP
EDAKVNISEAAAQGVNCLKPEYIADYLMKEPPPPPSSYCLPAAAPYLQVANNTVSRKRKN
SEESNDVKRSRLY
NT seq
4542 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaggtgacaatgacccattctttgtgaaatttgtgaagacgcctgacaataca
gatttcttctatgaagctcatcaggaaatcaaagcatttcagtcagatgagtatctacac
ctaattgatgaaaaagaagctgttagcttaaaagagaaagacaagtctctttacatatgc
gaccccttcagtggtcctgtttttaaccatctcaagaagcttggttgtagaatagttgga
cctcctgtagttatattctgcatgaaacatcaacgatgtgttcctcgagctgaatacccc
gtcttcaacatggcaatggctgacatcacaatttcctgcacaagtcttgacaaagaaacc
agggaagaagttcatcagtacgtgcagttgatgggtggttgtgtctacaaagatcttaat
gtttcagtcagccatctaattgctggagaggttggcagcaaaaagtatcttgtggcagcc
agtctcaaaaaacctattcttctgccttcatgggtaaaagccctatgggagaggtcacaa
caaaggattattagccacacagatgttgatatggaggaatatttgtgtcccatcttcctc
ggctgtaccatctgtgtgactggattaagcagtttggatagaaaggaggtccaaaggctt
tcttcccttcatggtggccaatatactggtcagctcaagatgaatgagtctacacatctt
attgtgcatgaggctaaaggtcagaaatatgagtgtgctagaaaatggaatgtgcattgt
gtctcaatccagtggttctttgacagtattgagagaggtttttgtcaggatgagagcatg
tacacgatggaacccatgttatccactaagactatgccagagacttccaccccaacaagc
agcactaacaaactagataatcgggcattgtctgatgtcagccatatttctaacattagt
attaacagctgtgtgaatgaatctgcctttaattctgtgatgaatacaagactggagccc
ccaccagatactctcgaaaacttggacattagttctttacaggctccagaagatctgctt
gatggctgcaggatatatgtatgtggttttggaggaagaaagctagataagctgaggagg
ctcattaacagtggaggaggagtacgatttaatcagctcactggtgacgttacccatgtt
atcattggagaaaatgatgaggaactgaaaaagtttctaaacaagactaatcacaggcct
tacattctatctgtaaagtggttattagacagtttttcaaaagggactctgcaacctgag
gaaacttactttcattcctcttataaacctgccgagatccaggcaccagctcaaccagtt
ctcagttcgtctatgcagaagacaagcagtaaagtcccagtaaaaacagacaacctggct
cagaatcatcaggctgatgaagacctgctatctcagtatacagaaaatgatataacccta
ttaggtccaaagagccatgaaacttcaaacttgaattatttatccaactcaagtgtacag
ggtgatatgtcctcttacagcagccaaattggttttggagaaacttctacgataattgaa
ggaggcttgttcagtaagaaaagattcttggtcttgggttttgttgaggaggatgaagct
tgcataatagacataataaagaagaatgctggtaaagtattatctgcgcagaagagaatc
attgcccaatatgctgtggtgcctttactgggctgtgaagtggaggctacagttgaagaa
gttgtgactaatgcctggctaggaatgtgcatagaacaggagaagcttctggacccgcaa
tcaaattctctcttcacaccggtggtgtatgttgaaggcagcgcaccgctgaaagactgt
gttctttctgtgagccagtttatgggtgctgagagggattcattagtttatcttgcaggc
cttcttggagccaaagttcaagaatttttcgtaagaaaggcaaaccccaaaaaaggaatg
tttgccagtactcaccttgttctcagagaacctgagggctctaaatatgaggcagctaag
aagtggaatctgcccgcagttactatggcatggcttctacaatgtgccaaaactggcaaa
aaagcagatgaaagccgctttcttgttgagaatgcctgtgaaaatgataaagaagaaagt
tttgtaagtcagacatatagaccaacaatagccagacctacactagatacaccagatcgt
caagtgaattgtccagaagcattgaaaaaagctgcagtaacccctttagatatgaatcgc
tttcagagcaaagcgtttcagtctgtattgtccagacacaacagaaatgttccaacccct
agtggagagaataaactacctgcgagggaaccgtctttacatcttgatacaccatccaaa
tttctgtgcaaagataaactcttcaagccctcatttgacgtcaaggatgcccttgctgca
ctggacacaccaggtggaccaatccagaaacatagggcccaaaatactcctttgtcagaa
gttataggcagaaatttgcagcttgctcttgcaaacagtaatagacaaactgccgctctg
actgcaagtcctcagctaaagactactgagccaaaagaggtaaatcaagaacctaaaata
cttactgatgtagttatatgtgtaagcaagaagcttagcaaaagacaaggagaccttaat
ggtatagcagcctcacttggagcggaatacaggtggtgctttgatgagggtgtaactcac
tttatttatcagggaaaacagagtgacaccaacagggaatttagatctgtaaaggacagg
gctggcatccacatcgtttctgaacattggctattgtcttgtgcagaagagcaaaaaaaa
gtcccagagtctctttacccttatacatacaatccaaaaatgagtcttgacatcagtgct
acacaagatggagcgcacagtagcagtaaactttctacagcagtctcaaaacatgatgag
aataatggactaacagatgacgatgatcaaatagctgaaatttcgcctctaaagacgaat
aatactggaaatgctcaaaatgaaggaagtgaagtaaaaggagctcttacacagactcta
gaaatgagggagaatttccagcgacagcttcaagagctaatgtcagcaacatcaatggtg
aaggctcaaggacagaggacgtcattgagcagagcagggtttgataactctccttccact
cctgaaggagttcgttctagtagaaatggtcgtagctgggtgctggaagcaagaagaaat
actcgccagcccacagcagatctgaatacagagccatcacaaaatgaacaaattatttgg
gatgaccccacagcaagagaggagagagctaaacttgcgagcaacttgcagtggcccaat
agttcttctcaatacatggaacctcctcagccaaatataaaaactcaaaatgatgatcaa
gcccagtttaaggaatccttaacggacacagaattagctgatatggaagcctgtgaaatg
gataacactgcagctgaggtatttagaaaaggaaaagatttccaatctccagccaaagag
gaccagataatccccactccacgggctcccagtattgcctttccactagccaagccaatg
gtggctccacagcccaaggaaatgaatgaaggcccggtaatggaagagagagataaggaa
cgtcgattccagctttcttccttaaatccccaggaaagaattgactactgccagctcata
gaagagctaggtggaatagtgatagacaagcagtgttttgacccaagttgtacacacatt
attgttggacatccactccgtaatgagaagtatcttgcttcaatggcagcagggaaatgg
gtgcttcatcgatcttacctggaggcctgtcgagctacaaagcattttatcaaggaagat
gactatgaatggggaagcacttcagtattgaatgctgtcagtgccattaatccgcaacaa
cgtatgttggccgaggcagcaatgaggtggaggaagaagatacagagaataaagcaagat
actggcagtgtggagggagccttcagtggatggcgagttatattaaatgtggaccaagcg
aaagaagctggatttaaacgtctcctgcagtctgggggagcaaaggtatttgctggccat
tcctcctctctgtttaaggaagcaactcacttgtttgcagattttagtaagctgaaacct
gaagatgcaaaagtcaatatatctgaagctgcagcacaaggggtgaactgtttaaagcca
gagtacattgcagattacctaatgaaggaaccaccccctcctcccagcagctattgtctc
ccagctgctgccccctatctacaggttgcaaacaacacagtatcccgaaaaaggaaaaac
tctgaagaatccaacgatgtgaaaagatctaggctgtattaa
DBGET
integrated database retrieval system
