Bufo bufo (common toad): 121003310
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Entry
121003310 CDS
T07950
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
bbuf
Bufo bufo (common toad)
Pathway
bbuf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121003310 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbuf03019
]
121003310 (PATL1)
Messenger RNA biogenesis [BR:
bbuf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121003310 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
121003310 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
QRICH1
Motif
Other DBs
NCBI-GeneID:
121003310
NCBI-ProteinID:
XP_040290980
LinkDB
All DBs
Position
6
Genome browser
AA seq
724 aa
AA seq
DB search
MLRCQSLEDGDGFPDLEEDEEIDQFNDDTFGAGAIDDDWREEHERMAEMEEKMPSSHLLA
RSTSPMSDPLGEQQEELEYSLSQLVKEIEEQSLPRGTPTLLSSRINSSIWDSSSHLQPIR
GPFLTEDMSPLSILHEYGLAPIPPSNRDNTDRDASERALPRRSTSPIIGSPPVRAVPIGT
PPKHVGPIFSQQQVLCPNSIHIRAASSPFNNHPSKPATLLRHSFPSALSPLQRAQLVGGA
QATPGRMSPSQFARAGGLHGPVMASVTPQILQGHVRSMVSAGGGVFRPFFGVPSAAAPGA
HLKNIRPPQLQFLPDTTHLHPQHRRLLHQRQQNRIQHRGVNGSGGDHSSRSSHTEAHRRD
PYAGLMLQREKEWVCRIQLLQLQSTDPYHDDFYYQNYFEKLEKLSSSQDRPSEGPKKERT
KLITPQVAKLEHAYKPVQFEGSLGKLTVSSVNNPRKMIDAVATNRSDEEETREKQVRDKR
RQTLVVIEKAFSVLLELEDFERRFSLCCEHEEQEALNKERRQKLLQLCDILRVREGSERA
AEEQIVQIMCIRKGKRLVARIFPFLPLQECTSLISTAAHSLPFLIKKDVQDQILPFLAAP
CAQVVGQLSGTTLTSLLQCLCGSGVTSPQQQLTAVLQNKLGLTLLCQILERGEELMSSEC
PTAPKQSLWTPLVAQVAHCFLPIQANSLPQLLCSPVTALLHFSRYLNEQSLGKLRSKFRS
APSP
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgctacggtgtcagtctctcgaagatggtgatggcttccctgatctcgaggaggatgag
gagattgatcagtttaatgatgatacattcggagctggagcaattgatgatgactggcgg
gaggaacatgaacgtatggcagagatggaggagaagatgccctcttctcaccttttggcc
agaagtacttctcctatgagtgacccattgggagagcaacaggaagagctagagtacagt
cttagtcaacttgtgaaggagatagaagagcaatcactgcctcgtgggacacccactctg
ctgtcatccaggataaactcaagtatatgggattcttcctcacacctacagccaatcaga
gggccctttcttacagaggatatgagcccactgtccatactacacgagtatggcttggct
cccattcctccctccaaccgagacaatactgaccgagatgcctcggagagagctttacct
cgacgatccacctcccctattattggcagtccacctgtgagagctgtgcctattgggact
cccccaaaacatgttggcccaatattcagtcagcaacaggttttatgcccgaattccatc
cacattcgagcagcctcttcccctttcaacaaccatccgagtaaaccagcaacgcttttg
agacactcgttcccttctgccctctccccacttcagcgagcgcagctcgtaggaggagct
caggcaacacctggccggatgtctcccagtcagtttgctcgtgctggtggcctccatggt
cctgttatggctagtgtcacacctcaaattttacagggacatgtaaggtcaatggtttca
gcaggtggtggagtgttccgtcccttttttggtgttccctctgcagctgccccaggagcc
catctcaagaatataaggcctccgcagttgcagttccttcccgatactactcacctgcac
cctcagcacagacgtttacttcaccagcgccagcaaaaccgtatccaacacaggggggtt
aatgggtccggaggggatcactctagcaggtcctcacacacggaagctcatcggcgcgac
ccctatgcaggtcttatgcttcagcgagagaaggagtgggtctgccgtattcaactcctc
cagctgcagagcacagacccctatcatgatgatttctactaccagaattactttgagaag
ttggaaaagctttcctccagtcaagataggccaagtgagggtcccaagaaagaacggaca
aaattaatcacaccacaagtagccaaattggagcatgcctacaaaccagtgcagtttgaa
ggctctcttggaaagctgactgtatccagtgtgaacaacccacgaaagatgattgatgct
gtggcaaccaatcgctctgatgaagaggaaactcgggaaaagcaagtgcgtgacaaaaga
cgccaaactcttgttgtcattgaaaaggcattttctgtactgttagagctggaagacttt
gaaaggcgtttttctctctgctgtgaacatgaagagcaggaagcgctgaataaagaacgt
agacaaaaactgctccagctctgtgacatcctcagggttagggaaggaagcgagagagca
gccgaagaacagattgttcagatcatgtgtatccgaaagggaaaacgcctggtggctcgg
atattccctttccttcctttgcaagagtgcacatctttgatttccactgcagcccacagt
ttgccctttctcatcaaaaaggatgttcaagatcagatactgcctttccttgctgctcca
tgcgcccaagtggttggtcagctgtctggaaccacactcacttccctactacagtgtctc
tgtggatctggggttacatcccctcaacagcagcttacagctgttctccagaataaactc
ggcctgacccttctatgccagattcttgagcgaggtgaagagttaatgagttctgaatgc
cctactgcaccaaagcaatctctttggacacctctggttgcacaagttgctcattgcttt
ttgccgattcaagcaaactccctgccccaactcctatgctccccagtcacagctctgctc
cacttttcacggtacctcaatgaacagagtctcggcaaactacggtcaaagttcaggtcg
gctcccagtccctga
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integrated database retrieval system
