Bufo bufo (common toad): 121003363
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Entry
121003363 CDS
T07950
Symbol
PRPF6
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
bbuf
Bufo bufo (common toad)
Pathway
bbuf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121003363 (PRPF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bbuf03041
]
121003363 (PRPF6)
Spliceosome [BR:
bbuf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
121003363 (PRPF6)
Complex C
U5 SnRNP specific factors
121003363 (PRPF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_16
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_17
TPR_2
TPR_8
TPR_1
FAT
ARM_TT21_2nd
ARM_TT21_N
TPR_9
TPR_CcmH_CycH
TPR_21
TPR_11
ARM_TT21_C
ARM_TT21_5th
Motif
Other DBs
NCBI-GeneID:
121003363
NCBI-ProteinID:
XP_040291077
LinkDB
All DBs
Position
6:complement(132118159..132156056)
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AA seq
972 aa
AA seq
DB search
MAASSSSGSGPGPSGAGNPGGTSGLTASITGTMNKKKKPFLGMAAPLGYVPGLGRGATGF
TTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKNQDDDDEDLNDTNYDEFNGYAGSLFS
SGPYEKDDEEADAXLAALDKRMDERRKERXELREKEEIEKYAWKRPKIQQQFSDLKRKLA
EVTEEEWLSIPEVGDARNKRQRNPRHEKLTPVPDSFFAKHLQTGENHTSVDPRQTQFGGL
NTPFPGGLNTPSQGRMTPGLMTPGSGDLDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDP
KGYLTDLNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARN
LIMKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAICHLPQSVRIYIRAAELETDLRAKK
RVLRKALEHVPNSVRLWKAAVELEEPEDARIMLSRAVECCPTSVELWLALARLETYENAR
KVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIVDRAITSLRANGVEINREQWIQDA
EECDKAGSVVTCQAVVRAVIGIGIEEEDRKHTWMEDADSCVSHGALECARAIYAHALQVF
PSKKSVWLRAAYFEKNHGTRESLETLLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSI
LALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAATARVFMKSVRLEWVLGN
IEAALELCDEALSHYEDFPKLWMMKGQIEEQQQQMEKSREAYNQGLKKCPHSVSLWLLLS
RLEENVGQLTRARAILEKSRLKNPRVPELWLESVRLEYRAGLKNIANTLMAKALQECPNS
ALLWQEAIFQEARPQRKTKSVDALKKCEHDPHVLLAVASKLFWSERKISKARDWFHRTVK
IDSDLGDAWATFYKFELQHGTEEQQEEIRKRCENAEPRHGELWCAVSKDIMNWQNKLGEI
LTLVASKIKNTF
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctcctcgtcctcaggaagtggccctgggccctcaggagccggtaaccctggt
gggacatcaggcctcactgcgtctatcaccggcaccatgaacaagaagaagaagccgttt
ctgggcatggcggccccgctgggttatgtgccgggtctgggcagaggtgccacaggcttc
accacccgttctgatatcggtccggcccgtgatgccaatgacccagtggacgatcgtcat
gcaccgccagggaagaggacagtgggtgaccagatgaagaagaatcaagatgatgatgat
gaagatttgaatgacacaaattatgatgagtttaatggctacgctggaagcttgttctcc
agtggcccatacgagaaggacgatgaggaggctgacgcanntctagctgcactagacaag
aggatggatgagaggaggaaggaaagatgagagctgagagagaaagaggaaatcgagaaa
tacgcatggaagagacccaaaatccagcagcagttttctgatttaaagaggaaactggct
gaagtgactgaggaggagtggctcagcatcccagaggtcggagacgcccgcaataagcgg
cagagaaatcctcgccatgagaaactgaccccagtccctgacagcttcttcgccaaacat
ttacagactggtgagaatcacacatctgttgatccacggcagacgcaatttggaggccta
aataccccttttcctgggggattaaacaccccatcccaggggagaatgactcctgggcta
atgacacctggttctggagacctggatatgaggaagattggtcaggccagaaacactctg
atggacatgaggctgagtcaggtttctgactctgtcagtggtcagacggtggtggatcct
aaaggttacctgactgacctgaactccatgatcccaacacatggaggagacatcaatgat
attaagaaagcccgtctactactaaagtctgtacgagagactaaccctcaccatccacca
gcctggattgcttctgctcgtctggaagaggtcacaggcaaactgcaagtagcccggaat
ctcatcatgaaaggcacagagatgtgtcctaagagtgaagatgtctggttggaggctgct
cggctgcaacctggagacacagcaaaagcggtggttgctcaggccatctgtcacctccca
cagtctgtccggatttatatcagagctgcagagctggaaaccgatctccgtgccaaaaaa
cgtgtcttacgaaaagctctggaacacgtcccgaattctgtgcgtctgtggaaagcagct
gtggagctggaggaaccagaggatgctcgtatcatgctgagccgtgctgtggagtgctgc
cccaccagtgtagagctatggttggcccttgccaggcttgaaacctatgagaatgcccgc
aaggtcttgaataaggcacgtgaaaacattcccaccgacagacatatttggattacagct
gccaagctggaagaagccaatgggaacactcagatggtggagaagattgtagacagagcc
atcacctctctaagagcgaatggagtagagatcaatcgggaacagtggatacaggatgcg
gaggaatgcgacaaagctggcagtgtggtgacatgccaggcggtagtgagagcagtcatc
ggtattggcatagaggaagaggaccggaagcacacgtggatggaagatgctgacagttgt
gtgtctcacggtgccctggagtgtgcacgcgccatctatgcacatgccctccaggttttc
ccgagcaaaaagagtgtgtggctccgagctgcctattttgaaaagaaccatggtacaagg
gagtcactggagacccttctgcagagagctgttgcccactgtcctaaagccgaagtatta
tggttgatgggtgccaagtccaagtggctagcgggtgatgtgccagctgctaggagtatt
cttgcacttgccttccaggctaaccccaacagcgaggagatctggttggcagccgtcaag
ttggagtctgaaaataatgagtatgagagagctcgaagactgctggcaaaggctaggagc
agcgctgcaactgctagggtgttcatgaaatctgtgaggctggagtgggtgttggggaac
atagaagctgctctggagctgtgcgacgaggcactgagccactatgaagatttccccaaa
ctgtggatgatgaaaggccagattgaagagcagcagcagcagatggagaaatccagagag
gcgtataatcaggggctaaagaaatgcccgcattcagtttccctttggctattgctgtct
agattggaggagaatgtgggacagttgaccagggcacgagctatcctggagaagtcgcgt
ttgaaaaaccctagggttccagagttatggttggagtctgtgcggctggagtacagagct
ggtttaaagaatattgcaaataccctgatggcaaaggctttgcaggaatgtcccaattca
gcactattgtggcaagaagcaatattccaagaggctagaccccagcgaaagaccaagagt
gtggatgctctgaagaaatgtgagcatgacccacatgtgctgctagcggtcgccagtaaa
ctgttctggagtgaacggaaaatttctaaggcccgggactggttccaccgcactgtgaag
attgattctgatctgggtgatgcctgggcaactttctacaaatttgagcttcagcatggt
acagaggagcaacaggaggagatcaggaagcgatgtgagaatgctgagccacggcacggg
gagctgtggtgtgccgtatccaaggacatcatgaactggcagaataaactgggagaaatt
ctcactttagtggcatcaaaaataaagaacacattctaa
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