Bufo bufo (common toad): 121005237
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Entry
121005237 CDS
T07950
Symbol
COL20A1
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
bbuf
Bufo bufo (common toad)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
VWA_2
Ig_DSCAM-DSCAML_C
VWA_3
Peptidase_C25_C
Motif
Other DBs
NCBI-GeneID:
121005237
NCBI-ProteinID:
XP_040293787
LinkDB
All DBs
Position
6:127811812..127953350
Genome browser
AA seq
1358 aa
AA seq
DB search
MTLPSCLLLFTAVFIQVCQKSPEPGIGRLRLSVLAEDRLQMKWREAEGLSNGYKVLVRPL
TGDPEQEVMLKTKTPKVTVGGLDPGKEYILQIHVIQGENDILIAKKRFIIDDLKAQFKTD
KKKPEITPTLRTHEMESSPSVRNSTSQTERPTESYHPVTLSTRPHGPGPDIKRYGSENAT
MLPKISSKMERDVSATSGTQQRGSMHHCDTALEWDIILLVDSSWSVGRTNFRLVKNFLWG
ILSPLHISRDKIRIGLSQYSREPQTEWDLNTYSSKSEVLDAIKRVKYKGGNTFTGMALIH
VLEENLRAASGARSLAGKVLILLTDGKSQDDAITVSKSLKQSGIYIFAIGVKNADESELR
QIASEPTELTLHMVPDFPMLSSLVGDVSRALCMRLKERRREADLGSWNVAGTGLLDPHPS
PTQLVVSDVTAKSMRVSWTPPQQPVKKYRIVYYPSRGGTPQEVVLDGDSSSAVLVNLTSR
TDYLVSVFPIYISGVGAGLRGITSTLPLTAPRALSADQVTDSSMQLHWQPSEGATHYLVT
YSAETDQGLEVTENKVEDTKFSLSGLWPRTLYSVTAVAVSGQESSDPVTIQQRTEPVPRN
LDFTNVTHSSVTVKWEKMPDDGPIQHVSYTPHTDGAQHGEIEVSDGSSSVTLKSLTSQTL
YTVTVTFQHRGSKTLTILTGNITTLKVPPPRGLKVVDLSGDKATVSWDPGADNVTSYIIK
WIPLSGGRLNQMSTVGSEQTAVLYDMEYSTEYQVSISARYMDGSQSDASSVRYNTGENLR
KMPIARGGFTLSRANDLCPLIEDKGMGNAFHGYNMMAVFGLDENNYSSIRGVSLNTFVLG
GSRIYSIAENIQLTLWTREVHPNGLPPEHSLSFLLRLPPNAAQEPFAVWQITDEDFQPVL
GIILDPTKQSLTYFHPDNEGKLHEVTFDQEDIKKIFYGSFHKVQLAINRGNVKLHVDCQK
VAEKTVKTMGKLTTLGFEMLGKLTRTRGPRSGSSALELQSFLIFCTSEIPVGDRCCDVPA
KRDKDSCPAPPSACICTSDVQGPPGPPGLPGPPGPRGSKGEQGEEGPMGEAGVAGQMGPE
GVGGRMGSPGARGMMVSGPMGPPGMKGDKGDTGSPGLQGPPGLEGIPGRDGMMGPKGIRG
VEGISGMPGPSGPRGIQGLHGLKGNPGDRGPVGDVGPTGLPGTRGEKGEKGEPQAIATIY
HLVHQVCERLIQAHLIKLDAVLREQDIQPVPVWDTELKMGEPGPPGPPGPPGQQGEPGVN
GASGQPAKNGYPGERGHKGSQGEKGAPGQGKEGPSGPPGAIGPPGIESFGNRGPIGSPGV
PGPPGASGISGHHGTPGVTGDCHSSPCFPVAQDPNIIP
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atgacgctcccatcctgtctgctcctgttcacagccgttttcatccaggtttgtcagaag
tcaccagaaccaggtatcgggcgattaagactatcagtccttgctgaagatagactacag
atgaaatggagggaggcagaaggactcagcaatggctacaaggtcctagttagaccactt
acaggggacccagagcaagaggtaatgctgaaaaccaagacccccaaagtgacagtaggt
ggcctggatcctggaaaggaatatattctccagatacatgtgattcaaggcgagaacgac
attctgatagcaaagaagagatttatcatagatgatttgaaagctcaattcaagactgat
aagaagaaaccagaaataactccaaccctgaggacccatgagatggaatcgtccccatct
gtaaggaacagcacatctcagacagagagaccaacagaaagttatcacccagtcaccctg
agtaccagaccacatgggcctggtcctgatataaaaagatatggctctgaaaatgcaacc
atgttgcctaagatttcctccaaaatggaaagagatgtttctgctacatctggtacccag
caaagaggatcaatgcaccactgtgacactgcacttgagtgggacatcattttactggtt
gatagttcatggagtgtaggacgcactaacttcaggcttgtgaaaaactttctctgggga
atacttagccccctccacatttcccgtgacaagattcgcattgggctttctcagtacagc
agagagccacaaacagagtgggacttgaatacatattcttccaaatctgaagtcttagat
gccattaaaagagtgaaatacaaaggaggcaacacatttactggtatggcacttatccat
gtcttggaggaaaatctcagagcagcttcgggggcccggtccttggcagggaaggtatta
atcctactgacagatgggaagtcacaggatgatgcaattacagtttcaaaaagtctcaaa
caatcgggaatttatatatttgccattggtgttaagaatgctgatgaatctgagttgaga
caaatagcatcagagccaacagagctgactctacatatggtacctgacttcccaatgcta
agctccttggtgggagatgtgtctcgagctctctgcatgagactgaaggagaggaggagg
gaagcagatcttgggtcttggaatgttgctggaacagggttgcttgaccctcatcccagc
cctacacagcttgtggtctcagatgtaacagctaagagcatgcgtgtctcctggactcct
cctcaacagcctgtcaagaagtatcgtatagtttactatccatcacgaggaggaactcct
caagaggtagtactagatggagactcttcttctgctgttctggtgaacttaacgtctcgt
acagactacctggtgtctgtgttccccatctatatcagtggtgtgggtgcagggcttcgt
ggaatcacctcaaccttgccactgacagctccccgtgctctctctgcggatcaagtgaca
gactcatccatgcagttacactggcagccatcggagggagccacacactacctggtgacc
tactctgcagagactgatcagggtttggaggtgacagagaataaggtggaagacacaaag
ttctctctgtctgggttatggcctaggaccctgtatagtgtaactgcggtggcggtgtct
gggcaggagtccagtgaccctgtcacaattcagcagaggacagaaccagtaccccgaaac
ctagacttcacaaatgtcacacacagctctgtcactgtcaaatgggaaaagatgcccgac
gatggaccgatccagcatgtgtcatatacccctcacacagatggtgctcagcatggagag
attgaagtatctgatggaagctcctctgtgaccttgaagtcgttgacctcgcagactctc
tacactgtcacggtcactttccaacacagaggttcaaagaccttgactatactgactgga
aacatcacaacgttgaaagttccgccccctagaggtctgaaagtagtagatctttctggc
gacaaagctactgtatcatgggatccaggagcagacaatgtgacttcctatataatcaag
tggattccactgagtggaggaagactaaaccagatgtccaccgttggcagtgagcaaaca
gctgtgctgtatgatatggagtatagtacagaataccaggtatcaatatctgcacggtac
atggatggatctcagagcgatgcatcttctgtacgctacaatacaggagaaaatctgagg
aagatgcctatagcccgtggtggattcacactgagccgtgcaaacgatttgtgtccactg
atcgaagacaaaggaatgggcaacgcttttcatgggtacaatatgatggcggtatttggc
ttggatgagaacaattactcttccattagaggggtatccctcaacacctttgttttaggg
ggttccaggatttattcaattgctgagaatatccagctgaccttatggaccagagaagta
catcccaatggacttcccccagaacacagcctgagcttccttcttcgcttgccaccaaat
gcggcccaggaaccctttgctgtgtggcagataacagatgaagattttcagcctgtcttg
gggattatcttggacccaactaagcagtctctgacatatttccaccctgacaatgagggt
aaattgcatgaggtgacctttgatcaagaagacataaagaagatcttctatggaagtttc
cataaggtacaattagctattaacagagggaatgtcaagctccatgtggattgtcagaag
gtggcagaaaagacagtcaaaactatggggaagttgaccaccttagggtttgagatgttg
ggcaaactaacaagaactcgaggtccaaggagtggttcctcagcactggagctccagtca
ttcctcatattctgcacttctgagattccagtaggagacaggtgctgtgatgttccagct
aagagggataaggacagctgtccagctccaccttctgcctgcatctgcacctcagatgtt
caaggacccccggggccccctggacttcctggaccaccaggtcctcgaggatccaaaggg
gagcagggtgaagagggaccaatgggtgaagctggagtagctggacagatgggtccagag
ggtgttggagggcgaatgggatctcctggagctcgtgggatgatggtttctggaccaatg
ggccctccgggtatgaaaggagacaagggggacacaggaagtcctggactgcagggtccc
cctggtctggagggcatcccaggaagagatgggatgatgggacccaagggtatacgaggt
gtggaggggatatctggaatgccaggaccatcagggcctcggggcatacaaggacttcat
ggtctcaaaggcaaccctggtgataggggtccagttggtgatgttgggcccacgggtctt
cctggaacccgtggagagaagggagagaagggggaacctcaggccattgcaacaatttac
cacttggtgcatcaggtgtgcgagaggctaattcaagctcatttgataaagctggacgcg
gtgcttagagaacaagatatacagcctgttcctgtgtgggataccgaattaaaaatgggg
gaaccagggccaccaggacccccagggccaccagggcaacaaggagaaccaggtgttaat
ggggcatcaggacaaccggctaaaaacggatatccaggagaaagaggtcacaaaggatct
caaggagagaagggtgctccagggcaagggaaagaaggaccctcaggacctccaggtgca
attggtccaccaggaatagaaagttttggaaatcgtggccctataggttctcctggggtt
cctggtcctcctggagcttctgggatttctggccatcatggaactcctggagtaacagga
gactgtcattcatcaccatgttttccagttgctcaagatccgaacatcattccctga
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integrated database retrieval system
