Bufo bufo (common toad): 121005390
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Entry
121005390 CDS
T07950
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bbuf
Bufo bufo (common toad)
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bbuf03016
]
121005390 (RTCB)
Enzymes [BR:
bbuf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
121005390 (RTCB)
Transfer RNA biogenesis [BR:
bbuf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
121005390 (RTCB)
Prokaryotic type
tRNA splicing ligases
121005390 (RTCB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
121005390
NCBI-ProteinID:
XP_040294054
LinkDB
All DBs
Position
1:245529528..245545692
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIHKNCWRIRKGFVPNMQVEGVFYVNDPLEKLMFEELRNACRGGAAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMDNPDAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSMFDHIPVGVGSKGVIPMSAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPSKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYDE
YAGKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARISS
SEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKEKTLLVHRKGSTRAFPPHHPLIAVDYQMTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaatgacgagttacagtatctggacaagattcataagaactgctgg
aggatccgcaagggattcgtccccaatatgcaggtggaaggtgtgttctacgtgaatgat
cctctggagaagctgatgtttgaagagctgaggaacgcctgtcgtggtggtgcggctgga
ggttttcttccggcaatgaagcagattggtaatgtggcggctttaccaggaatagtgcat
aggtccattggtcttccggacgtccactcaggctacggctttgctattggcaacatggcg
gcttttgatatggataatcctgatgcagttgtctccccagggggtgtcggttttgacatt
aactgtggggtccgcttacttcgcaccaatcttgatgagggagatgtgcagccggttaag
gagcagctcgcccagtccatgtttgaccacattcctgtcggagtgggatccaaaggtgtt
atccccatgagcgccaaagatctagaagaagccctggagatgggagtggactggtccctc
agggagggctatgcatgggctgaagacaaggaacactgtgaggagtatggcagaatgctg
caggccgatcccagcaaggtgtcctccaaggccaagaagaggggtctgccccagcttggt
acactgggagctgggaaccattacgcagagatccaggtggtggacgagatttatgatgaa
tacgctggcaaaaaaatgggcattgaccacaagggacaggtgtgtgtcatgattcacagt
ggaagccgaggtctagggcaccaagtggccacagatgctctggttgccatggaaaaagcc
atgaaacgagataaaatcattgtaaatgataggcagctggcatgcgccaggatctcctct
tctgagggacaggactatctgaagggcatggccgctgccgggaactacgcctgggtgaac
cgttcgtctatgacgttcctcacgagacaggcgtttgctaaagtcttcaacactaccccc
gatgacctggacatgcatgtgatctacgacgtctcacacaacatcgccaaggtggagcag
catgtggtggatggaaaggagaagacactgctggttcacaggaagggctctacccgagcg
ttcccaccacatcacccacttattgctgtggattatcagatgaccgggcagccagtgctg
atcggtggcaccatgggaacctgcagctacgtattgactggcactgagcaaggcatgaca
gagacatttggaaccacctgccacggagccggtcgggcgctgtccagagctaaatctaga
cgaaacctggactttcaagatgttctggataagctggctgacatgggcatagccatccgg
gtggcctccccaaaacttgtcatggaagaggctcctgaatcatacaagaacgtcacagac
gtagtgaatacttgtcacgatgccggaatcagcaagaaagccatcaagctgcgtcccatc
gccgtcatcaagggctga
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