Bufo bufo (common toad): 121006116
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Entry
121006116 CDS
T07950
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
bbuf
Bufo bufo (common toad)
Pathway
bbuf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121006116 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bbuf03041
]
121006116 (DDX42)
Enzymes [BR:
bbuf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121006116 (DDX42)
Spliceosome [BR:
bbuf03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
121006116 (DDX42)
Complex B
121006116 (DDX42)
Complex C
U2 SnRNP specific factors
121006116 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
SelP_N
Motif
Other DBs
NCBI-GeneID:
121006116
NCBI-ProteinID:
XP_040294977
LinkDB
All DBs
Position
6:276885830..276927519
Genome browser
AA seq
942 aa
AA seq
DB search
MNWSKGGPSGKRGFGFGGFAIAAGKKEEPKLPQISHSAFSTTSTYGTANSSQLPSFYKIG
SKRANFDEENAYFDDEEEDSSNMDLPYIPAENSPTRQQIRSKTTDSDSEEDPLEAFMAEV
EDQAAQDMRKLEERDKEKKNARGIRDDIEEEDDQEAYFRFMAENPTAGLQPEEEEDNLEY
DSDGNPIASTTKRIIDPLPAIDHTEIDYAPFEKNFYEEHEEITALTPQQIVELRNKLNLR
VSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSG
KTAAFIWPILVHIMDQKELQPGDGPIAIIVCPTRELCQQIHSECKRFGKAYNLRSVAVYG
GGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVR
SVANHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDITQVVEILPSGP
DKWSWLTRRLVEFTSTGSVLLFVTKKANAEELANNLRVEDHPLGLLHGDMDQSERNKVIT
DYKKKNIPILVATDVAARGLDIPSIKTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLL
TPKDSNFAGDLVRNLEGANQYVSKELLDLAMQNSWFRKSRFKAGKGKKLNVGGGGLGYRE
RPGLGAETSERAISGSVMSNYEAFKPTGGAMGDRLSAMKAAFQSQYKNHFVAASLSTQKT
GTSTINSGAWTSAGSLSSVPNSAPQTQSSPSELSPPTSRGMLGFTSSGTLSSVPTAYPPM
VIPSLPAASPYSSKEGSSSSSSSSSSKESSGGRDKYSEGRGRHGDSHRHGDGHRHSDRDG
HRHSGSSRHSESRNGGEGRRNSDGRRESSRDSEGKRESSRDREDSRRDSSGDSRRESRDG
GESRKESSRDGDSRKEESRDNGKGETFAVPDPPKRKKSRWDS
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgaactggagtaaaggaggtccaagtggcaaacgtggctttggttttgggggatttgcc
attgctgcaggaaaaaaagaagagccaaagctcccgcagatttcgcatagtgctttcagc
acaacatctacctatggcactgccaacagctcccagctaccttcattctacaagattggg
tctaagagggccaactttgatgaagagaatgcatactttgatgatgaggaagaagactcc
agtaatatggacctgccatacatcccagcagagaattctccaaccagacagcagattcgc
tccaaaacaacagactctgacagcgaagaagaccctctagaggcctttatggcggaagta
gaggatcaggctgcccaggatatgagaaaacttgaggaaagagacaaggagaagaagaat
gcaaggggtatcagggatgacattgaggaagaagatgaccaggaagcctatttccggttc
atggcggagaacccaacagctgggctgcaacctgaagaggaagaagacaatcttgagtat
gacagtgatggtaaccctatcgcctcaaccaccaaacgcattattgatcctctccctgca
atagaccatacagagatagattatgcaccttttgagaagaacttctatgaagaacatgag
gaaatcactgctctgactccacagcagattgtagagctgaggaataaactgaacctacgg
gtctctggagcggctccaccccgtccgggcagcagctttgctcactttggatttgatgaa
cagcttatgcaccagattaggaagtctgaatacacccagcccacgcctatccaatgtcag
ggtgttcctgtggcgctcagtggacgagacatgattggcattgccaaaactggaagtggt
aaaacagcagcatttatctggcctatactggtgcacattatggaccagaaggagctgcag
ccaggagatgggcccattgccatcatagtgtgtcccacacgagagttgtgtcagcagatt
cacagcgagtgtaagcggtttggcaaagcctacaatctacgctctgtagcagtgtatgga
ggaggcagtatgtgggaacaagcaaaggctctgcaagaaggagcagagatagtcgtttgt
acaccgggacgtcttattgatcatgtgaagaaaaaggcgaccaacctacagagagtcacc
taccttgtatttgatgaagcggaccgcatgtttgacatgggttttgaataccaagttcga
tccgttgccaaccatgtgaggccggacaggcaaaccttgctgttcagtgccacgtttcgg
aagaaaattgaaaagctggccagagatattctgattgatcccatccgggttgttcagggt
gatattggagaggctaatgaggacatcactcaagtggtagaaattcttccctctggtcca
gataagtggtcctggctgactcgtagacttgtggagttcacatccactgggagcgtcctc
ctgtttgtcaccaaaaaagctaatgccgaagagctcgccaacaacttgcgcgtggaagat
cacccattaggtcttcttcatggagacatggaccagagtgaaaggaacaaggttatcaca
gactataaaaagaagaatatccccatcctagttgctacagatgttgctgccagaggtctg
gatattccatcaattaaaactgtcgtcaactatgacgtagcacgagatatcgacacacac
actcaccgcatcggtcgtacaggcagagcaggggaaaaaggtgtggcctatacgctttta
acacccaaagacagcaattttgctggggacctagtgaggaatttggaaggagccaatcaa
tacgtatcaaaggagctgcttgatctggcaatgcagaattcctggtttaggaagtctcga
ttcaaggctgggaaaggcaagaagctgaatgtaggtggtggtggacttggctaccgagaa
cgtcctgggcttggagcagaaacctctgaacgtgctattagcggcagtgtgatgagcaat
tatgaggccttcaaacctacaggaggagcaatgggagatcgactatctgccatgaaggct
gcatttcagtcacagtacaaaaatcattttgttgctgctagcttgagcacacagaaaacg
ggaacgtcaaccatcaactccggagcttggacgagtgcgggcagcttaagttcagttccc
aattctgcaccacagactcagtcatcgccatcagaactatctccacccacctccagagga
atgcttggctttaccagcagtggaacacttagcagtgttccaacagcttatccacccatg
gttattcctagcttacccgcagccagcccatatagtagtaaagaggggtctagtagtagt
agcagtagtagcagcagcaaagaaagcagtggtggccgggataaatacagtgaaggaaga
gggaggcatggggatagccatcggcatggagatggacatcgccatagtgacagagatggg
catcgccattccggcagtagccgacacagtgagagccgtaatggtggtgaagggaggaga
aatagtgatgggcggagggagagttcccgggacagtgaaggaaaaagagagagctcacga
gaccgggaagacagccggagagacagctctggagacagtcgaagagaaagccgagatgga
ggagaaagccgaaaagagagctcacgagatggcgacagtcgtaaggaggaatcccgagat
aatgggaaaggtgaaacatttgctgtaccagatccacccaaacgcaaaaagagcagatgg
gacagttaa
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