Bufo bufo (common toad): 121007357
Help
Entry
121007357 CDS
T07950
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
bbuf
Bufo bufo (common toad)
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bbuf04147
]
121007357 (COL18A1)
00535 Proteoglycans [BR:
bbuf00535
]
121007357 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
bbuf00536
]
121007357 (COL18A1)
Exosome [BR:
bbuf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121007357 (COL18A1)
Proteoglycans [BR:
bbuf00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
121007357 (COL18A1)
Glycosaminoglycan binding proteins [BR:
bbuf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121007357 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Motif
Other DBs
NCBI-GeneID:
121007357
NCBI-ProteinID:
XP_040295164
LinkDB
All DBs
Position
7:complement(173317074..173488112)
Genome browser
AA seq
1314 aa
AA seq
DB search
MANVIAPTVPISEMDNLNLPGSEQKEESTITYNQSSGSGSQTFNISARNLTSPGRATVEI
GLLQLIGDPPPEQITKIFGPDKNPGYVFGEEANTGQVAQYHLPNPLFRDFSILFHIQPKT
NKAGMLFSITDTSQSIVYIGVKLTEVKAGKQQIIFYYTEPGSPVSFPAATFTIGALTNLW
TRFAIGVEDEEVVLFMNCDEVERTRFERSPDEMELEEGSGLFVAQAGGADPDRYQGVIAE
LKIINDPRAAEMQCDEDGDDSDVISGDFGSGIPEREIVEVVTKAPTRLKEQAPITVPPIQ
RPSLEKETIVQRVEVEGQPAQNGQKGDRGEKGDRGPEGPKGGSGASTSSGVVHKGEKGQK
GEAGLKGSAGFAYPGTKGDKGDSGSPGVAGPPGPPGQPVLQSREGSTVQQVPGPRGPPGP
QGPPGTDGEPGDPGEDGKAGEIGPQGFPGTPGDPGMKGEKGDPGVSIRGLPGPPGPPGPA
GPATKMDKLTFIDMEGSGSGSGLENIRGPPGPPGPPGVPGLPGVPGQFGTNTTGIPGPPG
LPGNPGQNGMSGPPGPPGPPGKDGIPGISGLAGERGIDGEIGLPGAPGLKGKAGDPGIPG
TPGEMGLAGLPGPIGPRGIPGPPGPPGPAGPGLGVGFDDMEGSGFGFGGRGVAGPEGQTG
KPGLPGSKGDRGIPGLDGRPGLDGFPGPEGPRGEKGDTGERGEPGRDGIGLPGPPGPPGE
IIYSDVSRAIAGGIEREEGRDIGPQGPRGFKGEQGDQGYPGLPGIKGEKGDPAMIMGPDG
TLLVGGFRIEKGDPGPRGPQGPMGPEAKPGQKGEIGFPGRAGRPGMNGLKGEKGDPADPT
GFGRGPPGPPGPPGPPGNNVYSDQGSVGPQGYPGQKGERGFPGSKGDQGDVGPPGPAGSF
PYDLRDIANWAVKGEKGEPAGGYDQGIPGPPGNPGYPGLPGAKGDSIQGPPGPQGPPGTP
GVGYDGRQGSPGPPGPPGPPGPQSYPGPNRPALSIPGPPGPPGPPGSPGGSGGYSTATVL
HTFQTMLHLGQTLQEGTIILVLDQSELYVRVRSGFRKILLGDYVTLNGNGQGNEVAAEQP
PVIHYPSGNRDSGYYQSTDEHVPPPQPPRPEPPPQVFPRPAEPERNAPAVHTHQEYQAAL
HLVALNAPLSGSMRSIRGVDFQCFEQARKAGLHGTFRAFLSSRLQDLYSIVRKADRLNVP
IVNLRDETLFDSWESLFSVSEGQMKPGARIYSFDGRDVVTDSTWPQKMIWHGSDTKGRRL
TENYCETWRTDESVVTGQASSLLSGKLLEQRSQSCNKNFIVLCIENSFTFTGQK
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atggccaatgtaattgccccgactgttccgataagcgaaatggacaacttaaatctgcct
ggctctgagcagaaagaagaaagcaccattacatacaatcagtcttccggttccggtagt
cagacttttaacatcagtgcaaggaatcttacgtcaccaggccgtgcaactgtagagatt
ggtctcttacaactcatcggagatccaccgccagaacagatcaccaagatctttggtcct
gataagaaccccggctatgtatttggagaagaggccaacacaggccaagtggcccaatac
catctccccaaccccttatttagagacttttctattctgttccacatccaaccaaaaact
aacaaggctgggatgctgttctctatcactgatacctcacaatccattgtctacattggg
gtgaagttgactgaggtcaaagctggtaagcagcagattattttttactacacagagcct
ggatcaccagtatctttccctgccgccaccttcactattggagcactgactaacctatgg
acacgctttgccattggtgtggaggatgaggaagttgtgttattcatgaattgtgatgaa
gtcgagaggactcggtttgagagatcacctgatgagatggagctggaagagggttctgga
ctttttgttgcccaggctggaggcgcagatcctgatcgctaccagggagtcattgcagaa
ctaaagatcataaatgatcccagagcggcagaaatgcaatgtgatgaggatggagatgat
tctgacgtgatttctggagactttggcagtggcatcccagagagagagattgtggaggtg
gtgaccaaggctccaacaagactcaaggaacaagctcccatcacagtacctcccatacag
agaccatctttggaaaaagagactattgtacagagagtggaagtagaaggtcagccagcc
cagaacggacagaaaggagaccgaggcgagaagggtgatagaggtcctgaaggtccaaaa
ggtggaagtggtgccagtacaagctcaggtgttgtccataaaggagaaaagggccagaaa
ggagaagctggacttaaaggtagtgcaggatttgcatatccaggaacaaagggagataaa
ggagactctggatcccctggtgtagccgggccacctggtcctccagggcaaccagtatta
cagagcagagaaggcagcactgtacagcaagttccaggacctcggggacctcctggtcca
cagggacctccaggaacagacggagagcctggtgaccctggagaagatggcaaagctggt
gaaattggacctcagggattcccaggaacaccaggagatcctggtatgaagggagaaaag
ggtgatccaggagttagtattagaggtctaccaggaccaccaggacctccaggcccagct
ggcccagccaccaaaatggataaattgacattcattgacatggaaggttctggatctggg
tcaggtctagaaaacatcagaggaccacctggtccacccgggcctcctggtgtacctgga
ttgccaggagtaccaggacagtttggaacgaacaccacaggaatacctggcccccctggc
ctacctggtaaccctggacaaaatggaatgtccggcccccctggtcctccgggaccccca
ggaaaagatggaatcccagggatttccggacttgctggtgagaggggtatagacggtgaa
attgggcttccaggagctcccggactgaaaggaaaagctggggatcctggaattccagga
actcctggagaaatgggattagcaggacttcctggaccaataggaccacgtggaatacct
ggacccccagggcctcctggtcccgctggacctggattaggtgttggatttgatgacatg
gaaggttctggatttggttttggtggccgtggagttgcgggcccagagggacaaacaggg
aaaccaggacttccaggctcaaagggagatcgtggaattccaggtttggatggaagacct
ggactggatggattccctggtcctgagggtccaaggggagaaaagggggatacaggagaa
aggggagaacctggtcgtgatggcattggacttcccggaccacctggacctcccggtgaa
atcatttacagcgatgtaagccgggcgattgctggaggaatagagagagaagagggtaga
gacattgggccccaaggacccaggggattcaaaggtgaacaaggtgatcaaggttatcca
ggactgcccggaattaagggagagaaaggtgacccagcaatgattatgggacctgatggc
accctacttgtgggaggcttcagaatagagaagggagacccaggaccaagaggtccacaa
ggaccaatgggacctgaagccaaaccaggacagaaaggtgaaattggattcccaggaagg
gccggtcgtcctggtatgaatggactgaaaggagagaaaggtgatcctgcagatcctact
ggttttggaaggggaccaccaggacctcctggaccacctggtcctccagggaacaatgta
tacagtgatcaggggtctgttgggccacaaggatatccaggtcagaaaggggagcgagga
tttccaggatcaaaaggtgatcagggagatgttggccctcctggcccagcaggaagtttc
ccatatgatttgagagatatagcaaattgggcagtaaagggagagaaaggagaacctgca
ggaggatatgaccaaggaataccaggtcctccaggtaatcctggatatccaggactgccg
ggagctaaaggagacagcatccaaggtcctccaggtccacagggtcctccaggaactcct
ggcgtgggatatgatggaagacagggatcacctggacccccaggaccaccaggacctcct
ggacctcagtcatatcctggacccaacagaccagctttaagcattccaggaccaccagga
cctccagggccacccggatctccaggagggtcaggtggatattctacagctacagtactg
catactttccagactatgcttcacctgggccagactttgcaggaagggaccattatactg
gtgctggaccaatcagaactatatgtgcgagtcaggagtggattccgaaaaatacttctt
ggtgactatgtaacactgaatggtaatggccagggtaatgaagttgctgcggaacaacca
cctgttattcattatccttctggcaacagagattcaggatattatcagtctacagatgag
catgttcctccacctcaacctccacgacctgagccaccacctcaagtctttcccagaccc
gcagagccagagagaaatgctcctgccgtccacacacaccaagagtaccaagcagcgtta
catcttgtggcactaaatgccccactaagtggcagcatgcgttccatccgcggggttgac
tttcagtgctttgagcaggcgcgtaaagctggacttcatgggacattccgggcattccta
tcatcacggctacaggacttgtacagcatagtccgtaaagctgacagactcaacgtgccc
attgtcaatcttagggacgagacactgtttgacagctgggaatcactattttcggtttct
gagggacagatgaagcctggggctcgaatctattcatttgatggacgggatgttgtaaca
gattctacttggccacagaagatgatctggcatgggtcagacaccaaaggtcgccgtctc
actgagaactactgtgaaacctggcgtacagatgaaagcgtagtgaccggccaagcttca
tctctattaagtgggaaactcctagagcagcgttctcagagctgcaacaagaactttatt
gtcctgtgcattgaaaacagcttcacgttcacgggccagaaataa
DBGET
integrated database retrieval system
