Bufo bufo (common toad): 121007599
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Entry
121007599 CDS
T07950
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
bbuf
Bufo bufo (common toad)
Pathway
bbuf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121007599 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbuf03019
]
121007599 (PARN)
Enzymes [BR:
bbuf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
121007599 (PARN)
Messenger RNA biogenesis [BR:
bbuf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121007599 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_1
RRM_Thc1
YqeH-like_C
Motif
Other DBs
NCBI-GeneID:
121007599
NCBI-ProteinID:
XP_040295573
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All DBs
Position
7:complement(59898893..60033787)
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AA seq
633 aa
AA seq
DB search
MEITWRNFKEHLPTVCQAIAEADFLAIDGEFSGISDGPSFTALTNSLDTPEERYKKLKEH
SMEFLLFQFGLCTFKYDDTEAKYIIKSFNFYIFPRPFNRHSPDKKFVCQSSSIDFLANQG
FDFNKVFRDGIPYLNQEEERQLRDQQEDKRYHTNGASTTCYLYVSPDALRAPVAPVIPED
QKDFIDKIVGSVDEFLKDEEKKVLQLEPCTGYQRKLIYQTMNWKFPKGTHVETVESPNNE
RHMIITKVDEDERKTKELQKKAKEQEDLNDAVGFSRVVQAISSSGKLVVGHNMMLDVMHT
ISQFYCHLPEDLEEFKRLTNCVLPRVLDTKLMASTQPFKAIIAHTVLAELEKRLQLPPFK
PPKVESAEDFPSYDTKAGQLHEAGYDAYITGLCFVTMADYLGSFLSPPQTHVAAQSDVIS
PFFNKLFLMRITDIPYLNLDGPDLLPKRDNVLHVTFPKEWKASDLYQLFSAFGKIQVSWI
DDTSAFVTLTQTDQVQIAVNISRFAESYCVQTYAEYIAKKERPDLVKRKRTDDGWMDFER
KRPKTQYTYVAQNSRYHYSSSVDQPFSKKRSIDAVEEEADSVNPEESEGQGGEDASSPTA
SDSANSSKHKIDNDQAECSNSVSSEEFELVHAW
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcacctggcgcaattttaaggaacacttaccgacagtttgtcaggctattgcg
gaggcagacttcttggctattgatggagaattttcagggattagtgacgggccatctttc
acagctttaacaaatagtttggacacaccggaggaaagatataagaagctgaaggagcac
tctatggagtttctgttatttcagttcggcctgtgcacctttaagtatgacgacacggaa
gccaagtacatcataaaatcgtttaatttttatattttcccaagaccattcaatagacat
tcgccagacaagaagtttgtttgtcagagctcaagcatagattttctagctaatcagggt
tttgattttaacaaagtatttcgtgacggtattccatacttgaaccaagaggaggaaaga
cagctccgagatcagcaggaggataagcgttaccacacaaatggtgcaagcacgacgtgt
tacctgtacgtttcaccggatgcactgagggctccagtcgctcctgtcattcctgaggat
cagaaagattttattgataaaattgtagggtctgttgatgaatttttaaaagatgaagag
aaaaaagttctacagctagaaccttgtactgggtatcagaggaagcttatctaccagaca
atgaactggaagttccctaaaggcacccatgtggaaactgtagagtctccaaataatgaa
aggcacatgattattaccaaagtagatgaagatgagcggaagacaaaagagctgcagaaa
aaagccaaagaacaggaagaccttaatgatgctgttgggttttctagagttgttcaagca
atttcatcctctggtaaactcgtggttggacacaacatgatgttggacgtcatgcacacc
ataagtcagttctactgtcatttacctgaagatctggaagagtttaaaaggttgacaaat
tgtgttttaccaagagtgctggacactaagcttatggcctctacacaaccctttaaggca
attattgcacacactgtcctcgccgaactggaaaagagattacagttgcctcctttcaaa
cctccaaaagttgagagtgctgaagattttccaagttatgatacaaaggcaggacaactt
catgaagctggatatgatgcctacatcacaggactgtgctttgtcaccatggcagactat
ctaggttcgtttctaagcccaccgcaaactcatgttgcggcccagtctgatgtgatcagc
ccattctttaacaagctttttttgatgagaattacggacatcccatacctcaatctggac
ggtccagacttgctccccaagcgcgataatgtcctccatgtgacatttcctaaagaatgg
aaagccagtgacctttatcagctgttcagtgcctttggtaaaatccaggtctcttggatt
gatgatacttcagccttcgtaacactgacgcagacagatcaagtgcaaatcgctgtaaac
atcagcagatttgcagaaagctattgtgtccaaacatatgcagagtatattgcaaaaaaa
gagagaccagacctagttaaaagaaaacgtactgacgatggatggatggattttgaaagg
aagaggccgaaaactcagtacacgtatgttgcacaaaactcaagatatcattactcaagc
agtgttgatcaacctttttcaaaaaagagatctatagatgctgtagaggaagaagctgac
tctgtcaatccagaagaatcagaaggccagggaggagaagatgcatccagccccacagct
tcagattctgccaatagtagcaagcacaagatagacaatgatcaagcagagtgcagcaac
agtgtctcctcggaagaatttgaactggtgcacgcttggtag
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