Bufo bufo (common toad): 121009219
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Entry
121009219 CDS
T07950
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
bbuf
Bufo bufo (common toad)
Pathway
bbuf03013
Nucleocytoplasmic transport
bbuf03015
mRNA surveillance pathway
bbuf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbuf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121009219 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
121009219 (DDX39B)
03015 mRNA surveillance pathway
121009219 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbuf03019
]
121009219 (DDX39B)
03041 Spliceosome [BR:
bbuf03041
]
121009219 (DDX39B)
Enzymes [BR:
bbuf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121009219 (DDX39B)
Messenger RNA biogenesis [BR:
bbuf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121009219 (DDX39B)
Spliceosome [BR:
bbuf03041
]
Complex C
Other components
EJC/TREX
121009219 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121009219 (DDX39B)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
121009219
NCBI-ProteinID:
XP_040298122
LinkDB
All DBs
Position
8
Genome browser
AA seq
428 aa
AA seq
DB search
MAETDVDNELLDYEDDEVDNQAGGDAPDIAPKKEMKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLEPITGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEMLKKSCPHIVVGTPGRILALA
RNKNLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDLLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMQQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDAKILNEVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaccgacgtggacaacgagctgttggactatgaagacgacgaggtcgacaac
caggccgggggcgatgctccggacattgcccccaagaaggagatgaagggatcctatgtg
tccatccacagctctggattccgagattttcttctaaaacctgagttgctccgggccatc
gtggactgtggctttgagcatccatcagaagtacagcacgagtgtatccctcaggccatt
ctgggtatggacattctgtgccaggcaaagtctggcatgggcaaaacagccgtgtttgtc
ctggccacgttacagcagctggaacctattacaggacaggtttctgtcttagtcatgtgt
cacaccagagagctggccttccagatcagcaaagagtacgagcgattctccaaatacatg
ccgtctgtgaaggtggcagtgttttttggcggcctttctattaagaaggacgaggagatg
ctaaagaagagctgcccccatatagtggtgggcaccccgggccgaattctcgcgctggca
agaaacaagaacctgaatctcaagcacatcaaacactttatcttggacgaatgtgacaag
atgttagaacagctagacatgcgcagagatgttcaagaaatcttccgtatgacccctcac
gagaagcaggtcatgatgttcagcgccaccctcagcaaggagatccgcccagtctgccgc
aagttcatgcaagatccaatggaaatcttcgtggatgatgagaccaagctgaccctccac
ggcctgcagcagtactacgtcaaactaaaggacaatgagaaaaaccgcaaactgtttgac
ctcctggacctgttggagtttaatcaggtggtcatcttcgtaaagtccgttcagcggtgc
atcgctctggctcagcttctggtggaacagaatttcccagcgatcgctattcaccgcggg
atgcaacaggaggagagactctcccgatatcagcagttcaaggatttccagcgccgaatt
ctggtggccacaaacctgtttggtcgcgggatggatattgaaagagtgaatattgccttt
aattacgacatgccagaggattctgatacttacctgcacagggtggcacgagctggcagg
tttggtaccaagggtcttgccatcacattcgtctctgatgagggagatgcaaaaatcctg
aacgaggttcaagatcgttttgaggtcaacatcagtgagctgccggacgagattgacatt
tcatcatacattgaacagacccggtga
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